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Consistency of optimal sequence alignments
Bulletin of Mathematical Biology, 1990Pairwise optimal alignments between three or more sequences are not necessarily consistent as a whole, but consistent and inconsistent residues are usually distributed in clusters. An efficient method has been developed for locating consistent regions when each pairwise alignment is given in the form of a "skeletal representation" (Bull. math. Biol. 52,
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Space-conserving optimal DNA-protein alignment
Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004., 2004DNA-protein alignment algorithms can be used to discover coding sequences in a genomic sequence, if the corresponding protein derivatives are known. They can also be used to identify potential coding sequences of a newly sequenced genome, by using proteins from related species.
Pang, Ko +3 more
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Optimization of multiple‐sequence alignment based on multiple‐structure alignment
Proteins: Structure, Function, and Bioinformatics, 2005AbstractRoutinely used multiple‐sequence alignment methods use only sequence information. Consequently, they may produce inaccurate alignments. Multiple‐structure alignment methods, on the other hand, optimize structural alignment by ignoring sequence information.
Maxim, Shatsky +2 more
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Alignment particle swarm optimization
2009 8th IEEE International Conference on Cognitive Informatics, 2009Particle swarm optimization (PSO) simulates the boids' collective behaviors. The original biological background of boid should follow three basic simple steering behaviors: separation, alignment and cohesion. However, to promote a fast convergent speed, the velocity update manner of each boid omits the alignment rule, this may result premature ...
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Optimization of kiln alignment
2010 IEEE-IAS/PCA 52nd Cement Industry Technical Conference, 2010There is more than alignment involved to get the best performance from the kiln's support rollers.
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