Results 31 to 40 of about 712,778 (311)

In Search of Ambiguity: A Three-Stage Workflow Design to Clarify Annotation Guidelines for Crowd Workers

Frontiers in Artificial Intelligence, 2022
We propose a novel three-stage FIND-RESOLVE-LABEL workflow for crowdsourced annotation to reduce ambiguity in task instructions and, thus, improve annotation quality.
Vivek Krishna Pradhan, Mike Schaekermann, Matthew Lease, Matthew Lease   +3 more
doaj   +1 more source

Comparative analysis of genomics and proteomics in the new isolated Bacillus thuringiensis X022 revealed the metabolic regulation mechanism of carbon flux following Cu2+ treatment

Frontiers in Microbiology, 2016
Bacillus thuringiensis (Bt) X022, which showed strong insecticidal activity against several Lepidopteran pests, is a novel strain isolated from soil in China.
Meifang eQuan, Junyan eXie, Jie eRang, Xuemei eLiu, Tong eZhang, Fengjuan eZhou, Liqiu eXia, Shengbiao eHu, Yunjun eSun, Xuezhi eDing   +9 more
doaj   +1 more source

Fiji plugin for annotating movies with custom arrows

Biology Open, 2020
Annotation of time-lapse data provides an important tool to highlight dynamic processes. Particularly, arrows, circles and arrowheads are useful to pinpoint a specific process, stationary or evolving over time.
Stephan Daetwyler, Carl D. Modes, Reto Fiolka   +2 more
doaj   +1 more source

scTransSort: Transformers for Intelligent Annotation of Cell Types by Gene Embeddings

Biomolecules, 2023
Single-cell transcriptomics is rapidly advancing our understanding of the composition of complex tissues and biological cells, and single-cell RNA sequencing (scRNA-seq) holds great potential for identifying and characterizing the cell composition of ...
Linfang Jiao, Gan Wang, Huanhuan Dai, Xue Li, Shuang Wang, Tao Song   +5 more
doaj   +1 more source

Functional mapping and annotation of genetic associations with FUMA

Nature Communications, 2017
A main challenge in genome-wide association studies (GWAS) is to pinpoint possible causal variants. Results from GWAS typically do not directly translate into causal variants because the majority of hits are in non-coding or intergenic regions, and the ...
Kyoko Watanabe, E. Taskesen, Arjen van Bochoven, D. Posthuma   +3 more
semanticscholar   +1 more source

Önemli İki Hemziyye Şerhi: Hayru’l-Kırâ ve el-Minehu’l-Mekkiyye Mukayesesi

Trabzon İlahiyat Dergisi, 2022
Klasik dönemde yazılan eserlerin anlaşılmasında şerhlerin önemli bir işlevi vardır. Şiir şerhlerinde de tek bir beyit altında dil alanının yanı sıra birçok temel alanla ilgili bilgiler verilmektedir.
Zahir Aslan
doaj   +1 more source

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

Nucleic Acids Res., 2015
The RefSeq project at the National Center for Biotechnology Information (NCBI) maintains and curates a publicly available database of annotated genomic, transcript, and protein sequence records (http://www.ncbi.nlm.nih.gov/refseq/).
N. O'Leary, Mathew W. Wright, J. R. Brister, S. Ciufo, Diana Haddad, Richard McVeigh, B. Rajput, B. Robbertse, B. Smith-White, Danso Ako-Adjei, Alex Astashyn, Azat Badretdin, Yīmíng Bào, O. Blinkova, V. Brover, V. Chetvernin, Jinna Choi, Eric Cox, O. Ermolaeva, C. Farrell, Tamara Goldfarb, Tripti Gupta, D. Haft, Eneida L. Hatcher, W. Hlavina, V. Joardar, Vamsi K Kodali, Wenjun Li, D. Maglott, Patrick Masterson, Kelly M. McGarvey, Michael R. Murphy, K. O'Neill, S. Pujar, S. Rangwala, Daniel Rausch, Lillian D. Riddick, C. Schoch, Andrei Shkeda, Susan S. Storz, Hanzhen Sun, F. Thibaud-Nissen, I. Tolstoy, R. E. Tully, A. Vatsan, Craig Wallin, David Webb, Wendy Wu, M. Landrum, Avi Kimchi, T. Tatusova, Michael DiCuccio, P. Kitts, Terence D. Murphy, K. Pruitt   +54 more
semanticscholar   +1 more source

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

Nucleic Acids Research, 2010
High-throughput sequencing platforms are generating massive amounts of genetic variation data for diverse genomes, but it remains a challenge to pinpoint a small subset of functionally important variants.
Kai Wang, Mingyao Li, H. Hakonarson
semanticscholar   +1 more source

Selective Annotation Makes Language Models Better Few-Shot Learners [PDF]

International Conference on Learning Representations, 2022
Many recent approaches to natural language tasks are built on the remarkable abilities of large language models. Large language models can perform in-context learning, where they learn a new task from a few task demonstrations, without any parameter ...
Hongjin Su, Jungo Kasai, Chen Henry Wu, Weijia Shi, Tianlu Wang, Jiayi Xin, Rui Zhang, Mari Ostendorf, Luke Zettlemoyer, Noah A. Smith, Tao Yu   +10 more
semanticscholar   +1 more source

Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification

Microbial Genomics, 2021
Command-line annotation software tools have continuously gained popularity compared to centralized online services due to the worldwide increase of sequenced bacterial genomes.
Oliver Schwengers, L. Jelonek, M. Dieckmann, Sebastian Beyvers, J. Blom, A. Goesmann   +5 more
semanticscholar   +1 more source