Results 51 to 60 of about 175,783 (305)

3D Chromatin Architecture Provides Insights Into Leaf Trait Variation Among Pear Species

Advanced Science, EarlyView.
ABSTRACT Three‐dimensional (3D) chromatin architecture plays a fundamental role in eukaryotic gene regulations, its functional significance in perennial fruit trees remains poorly characterized despite extensive applications in crop genomics. Here, we developed high‐resolution (∼5 kb) Hi‐C maps of Pyrus and compared 3D genomic architecture of three ...
Yueyuan Liu, Chenhui Han, Cheng Xue, Manyi Sun, Bobo Song, Yongsong Xue, Guangyan Yang, Shaozhuo Xu, Wei Wei, Jiaming Li, Runze Wang, Jun Wu   +11 more
wiley   +1 more source

The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution

Nature Communications, 2021
Existing studies of the chromatin accessibility, the primary mark of regulatory DNA, in Arabidopsis are based mainly on bulk samples. Here, the authors report the regulatory landscape of Arabidopsis thaliana roots at single-cell resolution.
Michael W. Dorrity, Cristina M. Alexandre, Morgan O. Hamm, Anna-Lena Vigil, Stanley Fields, Christine Queitsch, Josh T. Cuperus   +6 more
doaj   +1 more source

Regulation of regeneration in Arabidopsis thaliana

aBIOTECH, 2023
We employed several algorithms with high efficacy to analyze the public transcriptomic data, aiming to identify key transcription factors (TFs) that regulate regeneration in Arabidopsis thaliana. Initially, we utilized CollaborativeNet, also known as TF-Cluster, to construct a collaborative network of all TFs, which was subsequently decomposed into ...
Md Khairul Islam, Sai Teja Mummadi, Sanzhen Liu, Hairong Wei   +3 more
openaire   +2 more sources

A Circadian Clock-Regulated Toggle Switch Explains AtGRP7 and AtGRP8 Oscillations in Arabidopsis thaliana

, 2013
Schmal C, Reimann P, Staiger D. A Circadian Clock-Regulated Toggle Switch Explains AtGRP7 and AtGRP8 Oscillations in Arabidopsis thaliana. PLoS Computational Biology. 2013;9(3): e1002986.The circadian clock controls many physiological processes in higher
Staiger Dorothee, Peter Reimann, Reimann, Peter, Schmal, Christoph, Dorothee Staiger (40787), Christoph Schmal, Schmal Christoph, Reimann Peter, Peter Reimann (395937), Staiger, Dorothee, Dorothee Staiger, Christoph Schmal (395936)   +11 more
core   +1 more source

Integration of Spatiotemporal Multi‐Omics in Peach Fruit Unravels a Metabolic Niche and the Genetic Basis of Trichome‐Mediated Stress Adaptation

Advanced Science, EarlyView.
This study constructed the first spatiotemporal multi‐omics map of peach fruit and discovered a key candidate gene that synergistically regulates trichome development and drought tolerance through the jasmonic acid signaling pathway, providing insights into the coupling mechanism between development and stress resistance.
Zhixin Liu, Ke Cao, Liping Guan, Aizhi Qin, Yong Li, Zihao Zhao, Yinpeng Zhang, Yaping Zhou, Lirong Wang, Xuwu Sun   +9 more
wiley   +1 more source

Characterization of the natural variation in Arabidopsis thaliana metabolome by the analysis of metabolic [PDF]

, 2011
Metabolite fingerprinting is widely used to unravel the chemical characteristics of biological samples. Multivariate data analysis and other statistical tools are subsequently used to analyze and visualize the plasticity of the metabolome and/or the ...
Vos, R.C.H., de, Patrick Kabouw, Harro J. Bouwmeester, Muth, D., Houshyani, B., Houshyani Hassanzadeh, B., Bino, R.J., Raoul J. Bino, Dorota Muth, Benyamin Houshyani, Kabouw, P., Bouwmeester, H.J., Ric C. H. de Vos, Vos de, R.C.H., de Vos, R.C.H.   +14 more
core   +1 more source

Ecological Adaptation Mechanisms Underlying Successful Plant Reproduction

Advanced Science, EarlyView.
During floral induction, various environmental and endogenous signals converge to regulate the florigen protein, which is transported from leaves to the SAM to initiate flowering. Within the SAM, a complex network of receptor kinases and small peptides orchestrates floral development with high spatiotemporal precision.
Hang Zhao, Shenghui Huo, Yue Xing, Shuxin Zhang, Guilin Li, Yihui Liu, Chongyang Jin, Fuguang Li, Xiaoyang Ge   +8 more
wiley   +1 more source

Genome-wide analysis of AAAG and ACGT cis-elements in Arabidopsis thaliana reveals their involvement with genes downregulated under jasmonic acid response in an orientation independent manner

G3: Genes, Genomes, Genetics, 2022
Cis-ciscis(N)(N)Arabidopsis thaliana(N)(N)(N)(N)
Zaiba H Khan, Siddhant Dang, Mounil B Memaya, Sneha L Bhadouriya, Swati Agarwal, Sandhya Mehrotra, Divya Gupta, Rajesh Mehrotra   +7 more
doaj   +1 more source

Clockwork green – the circadian oscillator in Arabidopsis

, 2006
Schöning JC, Streitner C, Staiger D. Clockwork green – the circadian oscillator in Arabidopsis. Biological Rhythm Research. 2006;37(4):335-352.Although rhythmic leaf movement in a higher plant was the first physiological process recognised to be under ...
Schöning, Jan C., Staiger, Dorothee, Streitner, Corinna   +2 more
core   +1 more source

Molecular genetic analysis of siRNA biogenesis and function in Arabidopsis thaliana [PDF]

, 2009
In diverse eukaryotes, small RNA products of Dicer-like (DCL) proteins regulate mRNA stability or translation, and direct chromatin modifications to genomic regions, phenomena collectively known as RNA silencing.
Blevins, Todd Lucas
core   +1 more source