Results 161 to 170 of about 231,744 (283)

Transposable Element‐Mediated Structural Variation Drives Flower Colour Diversification in Camellia

Plant Biotechnology Journal, EarlyView.
ABSTRACT The role of transposable elements (TEs) in genome evolution and phenotypic diversification in Camellia remains poorly understood. Here, we present an integrated analysis of genome resequencing data from 237 Camellia accessions and 11 de novo genome assemblies representing all major floral colour types.
Menglong Fan, Hong Jiang, Yuxiao Qu, Ying Zhang, Xinlei Li, Yan Wang   +5 more
wiley   +1 more source

Annotation matters: the effect of structural gene annotation on orthology inference. [PDF]

Bioinformatics
Prieto-Baños S, Nevers Y, Altenhoff A, Warwick Vesztrocy A, Dessimoz C, Glover NM.   +5 more
europepmc   +1 more source

Haplotype‐Resolved Genome Assembly and Population Genomics Reveal Evolutionary History and Agronomic Traits of Mulberry

Plant Biotechnology Journal, EarlyView.
ABSTRACT Mulberry is a representative economic tree species valued for both poverty alleviation and medicinal use. To advance the understanding of mulberry genomics and demography, we assembled high‐quality haploid genomes of two widely cultivated mulberry varieties NS14 and QS1, and analysed 376 accessions from 12 countries, including 39 ancient trees
Zhifeng Wang, Peigang Liu, Chengzhi Jiao, Yazhou Zhang, Zilong Xu, Tianbao Lin, Yan Zhu, Xin Jing, Yuan Huang, Nan Chao, Mengjie Zhao, Yan Liu, Huizi Liu, Bo Sun, Fen Zhang, Quanzi Li, Zhiqiang Lv, Xuepeng Sun, Ying‐Chung Jimmy Lin, Jia Wei   +19 more
wiley   +1 more source

Annotating the genome at single-nucleotide resolution with DNA foundation models. [PDF]

Nat Methods
de Almeida BP, Dalla-Torre H, Richard G, Blum C, Hexemer L, Gélard M, Mendoza-Revilla J, Tang Z, Marin FI, Emms DM, Pandey P, Laurent S, Lopez M, Laterre A, Lang M, Şahin U, Beguir K, Pierrot T.   +17 more
europepmc   +1 more source

Remote Sensing of Endogenous Pigmentation by Inducible Synthetic Circuits in Grasses

Plant Biotechnology Journal, EarlyView.
ABSTRACT Plant synthetic biology holds great promise for engineering plants to meet future demands. Genetic circuits are being designed, built and tested in plants to demonstrate the proof of concept. However, developing these components in monocots, which the world relies on for grain, lags behind dicot models, such as Arabidopsis thaliana and ...
Dong‐Yeon Lee, Lucia Acosta‐Gamboa, Luke Saleh, Sunita Pathak, Nathan Swyers, Austin Morgan, Susan Meerdink, Caroline Kuzio, Santiago Calderon, Hudanyun Sheng, Samuel Kenney, Alina Zare, Malia Gehan, Dmitri A. Nusinow   +13 more
wiley   +1 more source

SeqForge: a scalable platform for alignment-based searches, motif detection, and sequence curation across meta/genomic datasets. [PDF]

BMC Bioinformatics
Bring Horvath ER, Winter JM.
europepmc   +1 more source

Structural Variations Contribute to Subspeciation and Yield Heterosis in Rice

Plant Biotechnology Journal, EarlyView.
ABSTRACT Yield heterosis has been extensively exploited in hybrid breeding, with intersubspecific hybrids often exhibiting the most pronounced effects. However, developing elite hybrids remains a laborious and time‐consuming process. The genetic basis of heterosis has been debated for over a century, hindered largely by the lack of high‐quality genomes.
Zhiwu Dan, Yunping Chen, Wenchao Huang
wiley   +1 more source

Augustus' solar meridian functioning and the birth of the western leap year. [PDF]

Sci Rep
Baiocchi V, Baumgartner M, Barbarella M, D'Alessio MT, Del Pizzo S, Giannone F, Radicioni F, Stoppini A, Tosi G, Troisi S, Alessandri L.   +10 more
europepmc   +1 more source

Pangenome Analysis Reveals Structural Variations Associated With Citric Acid Accumulation in Prunus mume

Plant Biotechnology Journal, EarlyView.
ABSTRACT Pangenome can reveal a large number of variations, providing a more comprehensive view of the genetic diversity of species that a single reference genome cannot surpass. Here, we assembled the haplotype telomere‐to‐telomere genome and 10 chromosome‐level genomes, integrated with two previously reported genomes, and constructed a graph ...
Xiao Huang, Ximeng Lin, Pengyu Zhou, Wei Tan, Feng Gao, Zhaojun Ni, Ting Shi, Yang Bai, Chengdong Ma, Yufan Ma, Minglu Li, Faisal Hayat, Qixiang Zhang, Ryutaro Tao, Jianmin Wan, Zhihong Gao   +15 more
wiley   +1 more source

A High-quality chromosome-level genome assembly of Swertia przewalskii Pissjauk. [PDF]

Sci Data
Shuang H, Niu Y, Xu H, Yu J, Han Y, Zheng Q, Guan R, Zhang F, Chen S.   +8 more
europepmc   +1 more source