Results 131 to 140 of about 2,351 (208)

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II [PDF]

, 2012
Zhiyong Lu, Lynette Hirschman
openalex   +1 more source

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

BMC Bioinformatics, 2012
We present the preparation, resources, results and analysis of three tasks of the BioNLP Shared Task 2011: the main tasks on Infectious Diseases (ID) and Epigenetics and Post-translational Modifications (EPI), and the supporting task on Entity Relations (
Pyysalo Sampo, Ohta Tomoko, Rak Rafal, Sullivan Dan, Mao Chunhong, Wang Chunxia, Sobral Bruno, Tsujii Jun'ichi, Ananiadou Sophia   +8 more
doaj   +1 more source

Developing a biocuration workflow for AgBase, a non-model organism database [PDF]

, 2012
Lakshmi Pillai, Philippe Chouvarine, Catalina O. Tudor, Carl J. Schmidt, K. Vijay‐Shanker, Fiona M. McCarthy   +5 more
openalex   +1 more source

CurateGPT: A flexible language-model assisted biocuration tool [PDF]

arXiv
Effective data-driven biomedical discovery requires data curation: a time-consuming process of finding, organizing, distilling, integrating, interpreting, annotating, and validating diverse information into a structured form suitable for databases and knowledge bases.
arxiv  

Peer Review #1 of "Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily (v0.2)"

, 2021
Sushma Naithani, Daemon Dikeman, Priyanka Garg, Noor Al-Bader, Pankaj Jaiswal, Cordley Hall   +5 more
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A General Concept for Consistent Documentation of Computational Analyses

, 2015
The ever-growing amount of data in the field of life sciences demands standardized ways of high-throughput computational analysis. This standardization requires a thorough documentation of each step in the computational analysis to enable researchers to ...
Ebert, P., Lengauer, T., Müller, F., Nordström, K., Schulz, M.   +4 more
core   +2 more sources

Text mining for biocuration

, 2022

openalex   +1 more source

AgBase: supporting functional modeling in agricultural organisms [PDF]

AgBase (http://www.agbase.msstate.edu/) provides resources to facilitate modeling of functional genomics data and structural and functional annotation of agriculturally important animal, plant, microbe and parasite genomes.
Barrell, Barrett, Beissbarth, Bridges, Bright, Burt, Buza, Buza, Cathy R. Gresham, Cochrane, Conesa, Du, Fiona M. McCarthy, Flicek, Gene Ontology Consortium, Harhey, Howe, Huang da, Hui Wang, Hunter, Jaffe, Jaffe, Jaiswal, Jankun-Kelly, Kelley, Khatri, Khatri, Kumar, Lakshmi R. Pillai, Lederman, Maere, Manda, McCarthy, McCarthy, McCarthy, Mortazavi, Nanduri, Philippe Chouvarine, Prashanti Manda, Ranjit Kumar, Reference Genome Group of the Gene Ontology Consortium, Reimand, Sanders, Sayers, Seval Ozkan, Shane C. Burgess, Susan M. Bridges, Teresia J. Buza, Tony Arick, Tudor, UniProt Consortium, van den Berg, van den Berg   +52 more
core   +2 more sources

Living Collections: Biocuration in the Broadest Sense

The American Biology Teacher, 2009
From where 1 live, it takes me about an hour and a half to get into Manhattan, so I like to get as much done as I can while I'm there. A couple of weeks ago, the New York Hall of Science was sponsoring a lecture on the new online Encyclopedia of Life (EOL) at the National Arts Club in Gramercy Park.
openaire   +2 more sources

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data [PDF]

, 2018
Jasmine Young, John D. Westbrook, Zukang Feng, Ezra Peisach, Irina Persikova, Raul Sala, Sanchayita Sen, John M. Berrisford, G. Jawahar Swaminathan, Thomas J. Oldfield, Aleksandras Gutmanas, Reiko Igarashi, David Armstrong, Kumaran Baskaran, Li Chen, Minyu Chen, Alice R. Clark, Luigi Di Costanzo, Dimitris Dimitropoulos, Guanghua Gao, Sutapa Ghosh, Swanand Gore, Vladimir Guranović, P. Hendrickx, Brian P. Hudson, Yasuyo Ikegawa, Yumiko Kengaku, Catherine L. Lawson, Yu‐He Liang, Lora Mak, Abhik Mukhopadhyay, Buvaneswari Coimbatore Narayanan, Kayoko Nishiyama, Ardan Patwardhan, Gaurav Sahni, Eduardo Sanz‐García, Sato Junko, Monica Sekharan, Chenghua Shao, Oliver S. Smart, Lihua Tan, Glen van Ginkel, Huanwang Yang, Marina A. Zhuravleva, John L. Markley, Haruki Nakamura, Genji Kurisu, Gerard J. Kleywegt, Sameer Velankar, Helen M. Berman, S.K. Burley   +50 more
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