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Challenges in High-Performance Computing
Journal of the Brazilian Computer Society, 2023 High-Performance Computing, HPC, has become one of the most active computer science fields. Driven mainly by the need for high processing capabilities required by algorithms from many areas, such as Big Data, Artificial Intelligence, Data Science, and ...
P. Navaux, A. Lorenzon, M. Serpa
semanticscholar +1 more source
Applied Sciences, 2023 With recent advancements in computational biology, high throughput Next-Generation Sequencing (NGS) has become a de facto standard technology for gene expression studies, including DNAs, RNAs, and proteins; however, it generates several millions of ...
Salman Khan +6 more
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SBMLToolbox: an SBML toolbox for MATLAB users [PDF]
, 2006 We present SBMLToolbox, a toolbox that facilitates importing and exporting models represented in the Systems Biology Markup Language (SBML) in and out of the MATLAB environment and provides functionality that enables an experienced user of either SBML or
Bornstein, Benjamin J. +3 more
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Long non‐coding RNAs and their targets as potential biomarkers in breast cancer
IET Systems Biology, 2021 Breast cancer is among the lethal types of cancer with a high mortality rate, globally. Its high prevalence can be controlled through improved analysis and identification of disease‐specific biomarkers.
Maryam Khalid +9 more
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Long-range order and short-range disorder in Saccharomyces cerevisiae biofilm
Engineering Biology, 2019 Biofilm, a colony forming cooperative response of microorganisms under environmental stress, is a major concern for food safety, water safety and drug resistance. Most current works focus on controlling biofilm growth by targeting single genes. Here, the
Vincent Piras +2 more
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Constraint‐based models for dominating protein interaction networks
IET Systems Biology, 2021 The minimum dominating set (MDSet) comprises the smallest number of graph nodes, where other graph nodes are connected with at least one MDSet node. The MDSet has been successfully applied to extract proteins that control protein–protein interaction (PPI)
Adel A. Alofairi +2 more
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Deep learning approach for microarray cancer data classification
CAAI Transactions on Intelligence Technology, 2019 Analysis of microarray data is a highly challenging problem due to the inherent complexity in the nature of the data associated with higher dimensionality, smaller sample size, imbalanced number of classes, noisy data-structure, and higher variance of ...
Hema Shekar Basavegowda, Guesh Dagnew
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Ecosystem-Oriented Distributed Evolutionary Computing
, 2012 We create a novel optimisation technique inspired by natural ecosystems, where the optimisation works at two levels: a first optimisation, migration of genes which are distributed in a peer-to-peer network, operating continuously in time; this process ...
Briscoe, Gerard, De Wilde, Philippe
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Algorithm engineering for optimal alignment of protein structure distance matrices [PDF]
, 2011 Protein structural alignment is an important problem in computational biology. In this paper, we present first successes on provably optimal pairwise alignment of protein inter-residue distance matrices, using the popular Dali scoring function.
A. Andreeva +24 more
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Data model for biopart datasheets
Engineering Biology, 2018 This study introduces a new data model, based on the DICOM-SB (see glossary of terms for definition of acronyms) standard for synthetic biology, that is capable of describing/incorporating the data, metadata and ancillary information from detailed ...
Iñaki Sainz de Murieta +2 more
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