Results 31 to 40 of about 657,944 (323)

SBMLToolbox: an SBML toolbox for MATLAB users [PDF]

open access: yes, 2006
We present SBMLToolbox, a toolbox that facilitates importing and exporting models represented in the Systems Biology Markup Language (SBML) in and out of the MATLAB environment and provides functionality that enables an experienced user of either SBML or
Bornstein, Benjamin J.   +3 more
core   +1 more source

Construction and characterization of rectal cancer‐related lncRNA‐mRNA ceRNA network reveals prognostic biomarkers in rectal cancer

open access: yesIET Systems Biology, 2021
Rectal cancer is an important cause of cancer‐related deaths worldwide. In this study, the differentially expressed (DE) lncRNAs/mRNAs were first identified and the correlation level between DE lncRNAs and mRNAs were calculated.
Guoying Cai   +3 more
doaj   +1 more source

Synthetic biology, engineering biology, market expectation

open access: yesEngineering Biology, 2020
‘Engineering biology’ is being increasingly adopted as a term by organisations that seek to deliver benefits from ‘synthetic biology’. However, are ‘engineering biology’ and ‘synthetic biology’ different words with the same meaning or do they signal ...
Lionel Clarke
doaj   +1 more source

Weighted gene co expression network analysis (WGCNA) with key pathways and hub‐genes related to micro RNAs in ischemic stroke

open access: yesIET Systems Biology, 2021
Ischemic stroke (IS) is one of the major causes of death and disability worldwide. However, the specific mechanism of gene interplay and the biological function in IS are not clear. Therefore, more research into IS is necessary.
Xiang Qu   +5 more
doaj   +1 more source

Long non‐coding RNAs and their targets as potential biomarkers in breast cancer

open access: yesIET Systems Biology, 2021
Breast cancer is among the lethal types of cancer with a high mortality rate, globally. Its high prevalence can be controlled through improved analysis and identification of disease‐specific biomarkers.
Maryam Khalid   +9 more
doaj   +1 more source

Long-range order and short-range disorder in Saccharomyces cerevisiae biofilm

open access: yesEngineering Biology, 2019
Biofilm, a colony forming cooperative response of microorganisms under environmental stress, is a major concern for food safety, water safety and drug resistance. Most current works focus on controlling biofilm growth by targeting single genes. Here, the
Vincent Piras   +2 more
doaj   +1 more source

Constraint‐based models for dominating protein interaction networks

open access: yesIET Systems Biology, 2021
The minimum dominating set (MDSet) comprises the smallest number of graph nodes, where other graph nodes are connected with at least one MDSet node. The MDSet has been successfully applied to extract proteins that control protein–protein interaction (PPI)
Adel A. Alofairi   +2 more
doaj   +1 more source

Deep learning approach for microarray cancer data classification

open access: yesCAAI Transactions on Intelligence Technology, 2019
Analysis of microarray data is a highly challenging problem due to the inherent complexity in the nature of the data associated with higher dimensionality, smaller sample size, imbalanced number of classes, noisy data-structure, and higher variance of ...
Hema Shekar Basavegowda, Guesh Dagnew
doaj   +1 more source

Bidirectional Shaping and Spaces of Convergence:Interactions between Biology and Computing from the First DNA Sequencers to Global Genome Databases [PDF]

open access: yes, 2012
This article proposes a new bi-directional way of understanding the convergence of biology and computing. It argues for a reciprocal interaction in which biology and computing have shaped and are currently reshaping each other.
ABI   +64 more
core   +1 more source

Ecosystem-Oriented Distributed Evolutionary Computing

open access: yes, 2012
We create a novel optimisation technique inspired by natural ecosystems, where the optimisation works at two levels: a first optimisation, migration of genes which are distributed in a peer-to-peer network, operating continuously in time; this process ...
Briscoe, Gerard, De Wilde, Philippe
core   +1 more source

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