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Application of knowledge graphs in rare disease research. [PDF]
Fei Y, Ding H, Tong S, He Y, Cai W.
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Resources for screening the literature for glycan-related terms using PubAnnotation in GlyCosmos. [PDF]
Kim JD +3 more
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Generative AI in drug repurposing and biomarker discovery: a multimodal approach. [PDF]
Saranya K +3 more
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Ontology-Aware Biomedical Relation Extraction
2022MotivationAutomatically extracting relationships from biomedical texts among multiple sorts of entities is an essential task in biomedical natural language processing with numerous applications, such as drug development or repurposing, precision medicine, and other biomedical tasks requiring knowledge discovery. Current Relation Extraction (RE) systems
Ahmad Aghaebrahimian +2 more
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Making biomedical ontologies and ontology repositories work
IEEE Intelligent Systems, 2004It is becoming impossible to contemplate successful bio-medical research without canonical data structures. The biomedical computation community finds itself grappling with hundreds of different knowledge bases, metadata formats, and database schemas.
N.F. Noy, D.L. Rubin, M.A. Musen
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Towards Automated Biomedical Ontology Harmonization
2014The use of biomedical ontologies is increasing, especially in the context of health systems interoperability. Ontologies are key pieces to understand the semantics of information exchanged. However, given the diversity of biomedical ontologies, it is essential to develop tools that support harmonization processes amongst them.
Gustavo A, Uribe +2 more
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Biomedical Engineering through Ontologies
Proceedings of the International Conference on Knowledge Engineering and Ontology Development, 2014Biomedical engineering is the application of scientific and mathematical principles to practical ends in the medicine and biology fields. It comprises many research directions including computational model of HIV infection, integration of clinical and experimental data, etc.
Kameas Achilles, Seremeti Lambrini
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