Results 51 to 60 of about 157,658 (286)

Ontology-based knowledge representation of experiment metadata in biological data mining [PDF]

open access: yes, 2009
According to the PubMed resource from the U.S. National Library of Medicine, over 750,000 scientific articles have been published in the ~5000 biomedical journals worldwide in the year 2007 alone.
Burke, Squires   +12 more
core   +1 more source

Text mining-based word representations for biomedical data analysis and protein-protein interaction networks in machine learning tasks

open access: yesPLoS ONE, 2021
Biomedical and life science literature is an essential way to publish experimental results. With the rapid growth of the number of new publications, the amount of scientific knowledge represented in free text is increasing remarkably. There has been much
Halima Alachram   +4 more
semanticscholar   +1 more source

Quantifying the impact and extent of undocumented biomedical synonymy. [PDF]

open access: yesPLoS Computational Biology, 2014
Synonymous relationships among biomedical terms are extensively annotated within specialized terminologies, implying that synonymy is important for practical computational applications within this field.
David R Blair   +4 more
doaj   +1 more source

Reconstructing transcriptional regulatory networks using data integration and text mining [PDF]

open access: yes, 2015
Transcriptional Regulatory Networks (TRNs) are powerful tool for representing several interactions that occur within a cell. Recent studies have provided information to help researchers in the tasks of building and understanding these networks.
Carneiro, S.   +4 more
core   +1 more source

Literature-based discovery of diabetes- and ROS-related targets [PDF]

open access: yes, 2010
Background Reactive oxygen species (ROS) are known mediators of cellular damage in multiple diseases including diabetic complications. Despite its importance, no comprehensive database is currently available for the genes associated with ROS.
A Erol   +54 more
core   +5 more sources

Towards cross-platform interoperability for machine-assisted text annotation [PDF]

open access: yesGenomics & Informatics, 2019
In this paper, we investigate cross-platform interoperability for natural language processing (NLP) and, in particular, annotation of textual resources, with an eye toward identifying the design elements of annotation models and processes that are ...
Richard Eckart de Castilho   +4 more
doaj   +1 more source

Biomedical text mining applied to document retrieval and semantic indexing [PDF]

open access: yes, 2009
In Biomedical research, the ability to retrieve the adequate information from the ever growing literature is an extremely important asset. This work provides an enhanced and general purpose approach to the process of document retrieval that enables the ...
Carneiro, S.   +10 more
core   +1 more source

OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis

open access: yesbioRxiv, 2021
Extracting and processing information from documents is of great importance as lots of experimental results and findings are stored in local files. Therefore, extracting and analysing biomedical terms from such files in an automated way is absolutely ...
Fotis A. Baltoumas   +10 more
semanticscholar   +1 more source

Ten tips for a text-mining-ready article: How to improve automated discoverability and interpretability.

open access: yesPLoS Biology, 2020
Data-driven research in biomedical science requires structured, computable data. Increasingly, these data are created with support from automated text mining.
Robert Leaman   +3 more
doaj   +1 more source

A Novel Text-Mining Approach for Retrieving Pharmacogenomics Associations From the Literature

open access: yesFrontiers in Pharmacology, 2020
Text mining in biomedical literature is an emerging field which has already been shown to have a variety of implementations in many research areas, including genetics, personalized medicine, and pharmacogenomics.
Maria-Theodora Pandi   +7 more
doaj   +1 more source

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