Bipartite graph-based approach for clustering of cell lines by gene expression-drug response associations. [PDF]
Bioinformatics, 2021 Chi C, Ye Y, Chen B, Huang H.
europepmc +1 more source
Geometry‐Aware Alignment and Comparison of Hierarchical Morse Complexes with Applications
Computer Graphics Forum, EarlyView.Abstract Scalar fields derived from 3D X‐ray CT scans of samples undergoing ex situ processes, such as thermal aging, chemical etching, or mechanical stress, pose unique challenges for characterizing similarities and differences across acquisitions. Typically, a sample A (source) is imaged, removed, and subjected to experimental conditions that alter ...
Aniketh Venkat +3 more
wiley +1 more source
Bipartite graph-based collaborative matrix factorization method for predicting miRNA-disease associations. [PDF]
BMC Bioinformatics, 2021 Zhou F +5 more
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Clusterix: A Hybrid Visualization Model for Hierarchically Clustered Networks
Computer Graphics Forum, EarlyView.Abstract We introduce Clusterix, a novel hybrid visualization model for representing hierarchically clustered networks, which also supports directed and weighted edges. Clusterix offers an integrated view of both the network and its full cluster hierarchy by compactly visualizing the cluster inclusion tree enriched with links of the network.
Carla Binucci +6 more
wiley +1 more source
GAGrank: Software for Glycosaminoglycan Sequence Ranking Using a Bipartite Graph Model. [PDF]
Mol Cell Proteomics, 2021 Hogan JD +5 more
europepmc +1 more source
Forest edges buffer effects of agricultural management on bee–plant interaction networks
Ecological Entomology, EarlyView.Agricultural management effects: Organic and conventional crop margins host similar bee and plant species, but network structure differs: organic farms exhibit higher interaction diversity, conventional farms higher connectance. Role of forest edges: Native forest edges stabilize bee–plant networks by providing continuous floral resources and suitable ...
Samantha Marx de Castro +6 more
wiley +1 more source
Quasi-Irreducibility of Nonnegative Biquadratic Tensors
MathematicsWhile the adjacency tensor of a bipartite 2-graph is a nonnegative biquadratic tensor, it is inherently reducible. To address this limitation, we introduce the concept of quasi-irreducibility in this paper.
Liqun Qi, Chunfeng Cui, Yi Xu
doaj +1 more source
A bipartite graph-based expected networks approach identifies DDR genes not associated with TMB yet predictive of immune checkpoint blockade response. [PDF]
Cell Rep Med, 2022 Weir WH, Mucha PJ, Kim WY.
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Floral richness drives flower–insect networks in city gardens and allotments
Ecological Entomology, EarlyView.Floral richness was the main driver of flower visits within green spaces whilst green space in the surrounding landscape influenced flower visits by amplifying the effects of floral richness. Native plants received more visits than non‐native plants, although flower visitor richness to non‐native plants increased later in the season as non‐native plant
Emma Plant +4 more
wiley +1 more source
Certifying Induced Subgraphs in Large Graphs
Journal of Graph Algorithms and ApplicationsWe introduce I/O-efficient certifying algorithms for the recognition of bipartite, split, threshold, bipartite chain, and trivially perfect graphs. When the input graph is a member of the respective class, the certifying algorithm returns a certificate
Ulrich Meyer +2 more
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