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Bloom filters for molecules [PDF]

open access: yesJournal of Cheminformatics, 2023
Ultra-large chemical libraries are reaching 10s to 100s of billions of molecules. A challenge for these libraries is to efficiently check if a proposed molecule is present. Here we propose and study Bloom filters for testing if a molecule is present in a
Jorge Medina, Andrew D. White
doaj   +6 more sources

Scalable Bloom Filters [PDF]

open access: yesInformation Processing Letters, 2007
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Paulo Sérgio Almeida   +2 more
exaly   +3 more sources

Bloofi: Multidimensional Bloom filters [PDF]

open access: yesInformation Systems, 2015
Bloom filters are probabilistic data structures commonly used for approximate membership problems in many areas of Computer Science (networking, distributed systems, databases, etc.). With the increase in data size and distribution of data, problems arise where a large number of Bloom filters are available, and all them need to be searched for ...
Adina Crainiceanu, Daniel Lemire
exaly   +5 more sources

On the Privacy of Counting Bloom Filters [PDF]

open access: yesIEEE Transactions on Dependable and Secure Computing, 2023
Bloom filters are widely used in networking and computing to accelerate membership checking. In many applications filters store sensitive data, so their privacy is of primary concern. At first glance, it seems that extracting the set of elements inserted from the filter would not be possible, because in Bloom filters elements are mapped to positions ...
Alfonso Sánchez-Macián   +2 more
exaly   +4 more sources

A blinded evaluation of privacy preserving record linkage with Bloom filters [PDF]

open access: yesBMC Medical Research Methodology, 2022
Background Privacy preserving record linkage (PPRL) methods using Bloom filters have shown promise for use in operational linkage settings. However real-world evaluations are required to confirm their suitability in practice.
Sean Randall   +6 more
doaj   +2 more sources

Evaluation of approximate comparison methods on Bloom filters for probabilistic linkage [PDF]

open access: yesInternational Journal of Population Data Science, 2019
Introduction The need for increased privacy protection in data linkage has driven the development of privacy-preserving record linkage (PPRL) techniques.
Adrian P Brown   +3 more
doaj   +2 more sources

aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets [PDF]

open access: yesiScience, 2023
Summary: Dental calculus samples are modeled as a mixture of DNA coming from dental plaque and contaminants. Current computational decontamination methods such as Recentrifuge and DeconSeq require either a reference database or sequenced negative ...
Camila Duitama González   +4 more
doaj   +2 more sources

A Case for Partitioned Bloom Filters

open access: yesIEEE Transactions on Computers, 2023
In a partitioned Bloom Filter the $m$ bit vector is split into $k$ disjoint $m/k$ sized parts, one per hash function. Contrary to hardware designs, where they prevail, software implementations mostly adopt standard Bloom filters, considering partitioned filters slightly worse, due to the slightly larger false positive rate (FPR).
Paulo Sérgio Almeida   +1 more
openaire   +3 more sources

Privacy-preserving record linkage using Bloom filters [PDF]

open access: yesBMC Medical Informatics and Decision Making, 2009
Background Combining multiple databases with disjunctive or additional information on the same person is occurring increasingly throughout research. If unique identification numbers for these individuals are not available, probabilistic record linkage is
Reiher Jörg   +2 more
doaj   +2 more sources

Set reconciliation based on counting Bloom filters [PDF]

open access: yesTongxin xuebao, 2012
A new set reconciliation algorithm was presented,which called counting-Bloom-filter based set reconciliation(CBFSR).This method represented sets SA and SB as counting Bloom filters,subtracts SA's counting Bloom filter from SB's counting Bloom filter,the ...
Xiao-mei TIAN   +5 more
doaj   +3 more sources

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