Brownian dynamics simulation of protofilament relaxation during rapid freezing. [PDF]
PLoS ONE, 2021 Electron cryo-microscopy (Cryo-EM) is a powerful method for visualizing biological objects with up to near-angstrom resolution. Instead of chemical fixation, the method relies on very rapid freezing to immobilize the sample.
Evgeniy V Ulyanov +3 more
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Correction: Brownian dynamics simulation of protofilament relaxation during rapid freezing. [PDF]
PLoS ONE, 2021 [This corrects the article DOI: 10.1371/journal.pone.0247022.].
Evgeniy V Ulyanov +3 more
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Brownian Dynamics Simulation of Microscale Thermophoresis in Liquid [PDF]
ACS OmegaKoki Ide +3 more
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Dynamic decay and superadiabatic forces in the van Hove dynamics of bulk hard sphere fluids
SciPost Physics, 2022 We study the dynamical decay of the van Hove function of Brownian hard spheres using event-driven Brownian dynamics simulations and dynamic test particle theory.
Lucas L. Treffenstädt, Thomas Schindler, Matthias Schmidt
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Multi-particle Brownian Dynamics software ProKSim for protein-protein interactions modeling [PDF]
Компьютерные исследования и моделирование, 2013 Protein-protein interactions are of central importance for virtually every process in living matter. Modeling the dynamics of protein association is crucial for understanding their functionality.
Sergey Sergeevich Khruschev +8 more
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Brownian dynamics simulation of cytochrome c diffusion and binding with cytochrome c1 in mitochondrial crista [PDF]
ITM Web of Conferences, 2020 Cytochrome c (Cc) protein shuttles electrons from respiratory chain complex III — from cytochrome c1 (Cc1) subunit — to complex IV during oxidative phosphorylation, in intermembrane space of mitochondria and cristae lumen.
Abaturova Anna M. +4 more
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ReaDDy--a software for particle-based reaction-diffusion dynamics in crowded cellular environments. [PDF]
PLoS ONE, 2013 We introduce the software package ReaDDy for simulation of detailed spatiotemporal mechanisms of dynamical processes in the cell, based on reaction-diffusion dynamics with particle resolution.
Johannes Schöneberg, Frank Noé
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Investigation of complex formation of flavodoxin and photosystem 1 by means of direct multiparticle computer simulation [PDF]
Компьютерные исследования и моделирование, 2009 Kinetics of complex formation between components of the photosynthetic electron transport chain - flavodoxin and membrane complex photosystem I has been studied using computer model based on methods of multiparticle simulation and Brownian dynamics.
A. M. Abaturova +3 more
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Mathematics, 2021 In this article, we propose a test of the dynamics of stock market indexes typical of the US and EU capital markets in order to determine which of the two fundamental hypotheses, efficient market hypothesis (EMH) or fractal market hypothesis (FMH), best ...
Vasile Brătian +4 more
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Mechanical Engineering Journal, 2015 We have investigated the feasibility of the hybrid-type method of lattice Boltzmann and Brownian dynamics as a simulation technique for a magnetic particle suspension.
Akira SATOH
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