Results 181 to 190 of about 604,881 (306)

Analyzing histone ChIP-seq data with a bin-based probability of being signal. [PDF]

PLoS Comput Biol, 2023
Hecht V, Dong K, Rajesh S, Shpilker P, Wekhande S, Shoresh N.   +5 more
europepmc   +1 more source

ChIP-seq datasets

Datasets for specific TF and histones modification in the developing zebrafish embryo.
openaire   +1 more source

Autophagy Orchestrates Anti‐Tumor Immunity to Enhance Chemosensitivity via the FBXW2/C/EBPβ/TIMP‐2 Axis in Colorectal Cancer

Advanced Science, EarlyView.
Chemotherapy leverages tumor‐cell autophagy to reshape the colorectal cancer immune microenvironment. Autophagy degrades FBXW2 to promote C/EBPβ‐mediated TIMP‐2 transcription and MMP‐9 suppression, driving intra‐tumoral CD8+ T‐cell infiltration. Targeting MMP‐2/9 or restoring TIMP‐2 overcomes chemo‐resistance in autophagy‐deficient tumors. ABSTRACT The
Bing Cheng, Chaoying Wei, Zhitong Niu, Jinxin Chen, Guojie Long, Yingzhen Weng, Qiufeng Liu, Yue Jiang, Panpan Wang, Ronghua Zhang, Qiang Yu, Xiaojian Wu, Wenyu Wang   +12 more
wiley   +1 more source

Analysis of Putative CzcR Targets Under Zinc Sufficiency and Zinc Excess Conditions in <i>Pseudomonas aeruginosa</i> Using ChIP-Seq. [PDF]

Microorganisms
Mauffrey F, Ducret V, Milho CG, Perron K.   +3 more
europepmc   +1 more source

Validating a re-implementation of an algorithm to integrate transcriptome and ChIP-seq data. [PDF]

PeerJ, 2023
Ahmed M, Kim DR.
europepmc   +1 more source

Targeting the PHB2–ACSL3 Lipid‐Remodeling Axis Overcomes Cisplatin Resistance by Restoring Ferroptosis in Gastric Cancer

Advanced Science, EarlyView.
ABSTRACT Platinum‐based chemotherapy resistance remains a major obstacle in gastric cancer (GC) treatment. Through integrated transcriptomic profiling of cisplatin‐resistant xenografts and pharmacogenomic interrogation of the NCI‐60 dataset, we identified Prohibitin‐2 (PHB2) as a previously unrecognized determinant of chemoresistance.
Liang Xu, Wanying Xiang, Xinyue Wang, Yue Pan, Jing Gao, Jiezhen Yang, Yufei Wang, Zhipu Zhu, Man Tong, Lei Jin, Yan Ye   +10 more
wiley   +1 more source

CHIP-seq and transcriptomics reveal a new role of circadian-regulated StBBX24 protein in potato reproduction. [PDF]

BMC Plant Biol
Grądzka K, Biegańska M, Koczyk G, Młodzińska A, Pawłowicz I, Kiełbowicz-Matuk A.   +5 more
europepmc   +1 more source

Motif elucidation in ChIP-seq datasets with a knockout control. [PDF]

Bioinform Adv, 2023
Denisko D, Viner C, Hoffman MM.
europepmc   +1 more source

CHST1 Drives Immunotherapy Resistance in Triple‐Negative Breast Cancer by Orchestrating an Immunosuppressive Microenvironment via the NKRF–CCL20–Macrophage Axis

Advanced Science, EarlyView.
Proposed model of CHST1‐associated immune remodeling in triple‐negative breast cancer. In CHST1‐low tumors, greater nuclear accumulation of NKRF is associated with repression of an NF‐κB‐related CCL20 transcriptional program and an immune‐inflamed microenvironment.
Shu‐Hao Jiang, Xiao‐Han Ying, Ruo‐Qing Wang, Qun Zhang, Li Chen, Zhi‐Ming Shao, Jun‐Jie Li   +6 more
wiley   +1 more source

Evaluating Reproducibility and Best Practices for Replicate Design in G-Quadruplex ChIP-Seq Studies. [PDF]

Int J Mol Sci
Xiao K, Zhang R, Tu J.
europepmc   +1 more source