Results 41 to 50 of about 673,559 (305)
, 2022 A) Log2 immunoprecipitate/Input ChIP-seq data from each replicate (2x AP2-EXP::GFP and 1xAP2-EXP::HA) of AP2-EXP ChIP-seq visualized by IGV at a representative DNA locus.
Charisse Flerida A. Pasaje (13949382) +13 more
core +1 more source
Impact of genome assembly status on ChIP-Seq and ChIP-PET data mapping
BMC Research Notes, 2009 Background ChIP-Seq and ChIP-PET can potentially be used with any genome for genome wide profiling of protein-DNA interaction sites. Unfortunately, it is probable that most genome assemblies will never reach the quality of the human genome assembly ...
Sachs Laurent, Buisine Nicolas
doaj +1 more source
ChIP-Seq of HNRNPL in proliferating keratinocytes.
, 2021 List of the genes bound by HNRNPL including the coordinates where the peaks were found. ChIP-Seq, chromatin immunoprecipitation sequencing; HNRNPL, heterogeneous nuclear ribonucleoprotein L. (XLSX)
George L. Sen (6847421) +4 more
core +1 more source
diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates. [PDF]
PLoS ONE, 2013 ChIP-seq is increasingly being used for genome-wide profiling of histone modification marks. It is of particular importance to compare ChIP-seq data of two different conditions, such as disease vs.
Li Shen +5 more
doaj +1 more source
SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis
BMC Bioinformatics, 2018 Background Noises and artifacts may arise in several steps of the next-generation sequencing (NGS) process. Recently, an NGS library preparation method called SMART, or Switching Mechanism At the 5′ end of the RNA Transcript, is introduced to prepare ...
Dejian Zhao, Deyou Zheng
doaj +1 more source
Profiling chromatin regulatory landscape: insights into the development of ChIP-seq and ATAC-seq
Molecular Biomedicine, 2020 Chromatin regulatory landscape plays a critical role in many disease processes and embryo development. Epigenome sequencing technologies such as chromatin immunoprecipitation sequencing (ChIP-seq) and assay for transposase-accessible chromatin with high ...
Shaoqian Ma, Yongyou Zhang
doaj +1 more source
ENCODE-DCC/chip-seq-pipeline2: v2.2.0
, 2022 Upgrade Caper to >=2.2.0 for new HPC features. $ pip install caper>=2.2.0 --upgrade Conda environment name change: encode-chip-seq-pipeline -> encd-chip Please reinstall your Conda environment after updating pipeline's git repo.
Jin wook Lee +5 more
core +1 more source
RNA‐related functions of BRCA2 in transcription, replication, and genome stability
FEBS Letters, EarlyView.Beyond its role in homologous recombination, BRCA2 regulates R‐loop homeostasis, DNA–RNA hybrid resolution, RNA polymerase II dynamics, and transcriptional activation. Disruption of any of these functions can contribute to genome instability, inflammatory signaling, and tumorigenesis. BRCA2 is a central tumor suppressor protein best known for its roles
Lucia Alvaro‐Aranda +2 more
wiley +1 more source
STAR Protocols, 2020 Summary: Chromatin immunoprecipitation with sequencing (ChIP-seq) has been instrumental in understanding transcription factor (TF) binding during gene regulation.
Martyna Lukoseviciute +6 more
doaj +1 more source