Results 101 to 110 of about 673,559 (305)

TAF-ChIP: an ultra-low input approach for genome-wide chromatin immunoprecipitation assay

Life Science Alliance, 2019
The authors present a novel method for obtaining chromatin profiles from low cell numbers without prior nuclei isolation. The method is successfully implemented in generating epigenetic profile from 100 cells with high signal-to-noise ratio.
Junaid Akhtar, Piyush More, Steffen Albrecht, Federico Marini, Waldemar Kaiser, Apurva Kulkarni, Leszek Wojnowski, Jean-Fred Fontaine, Miguel A Andrade-Navarro, Marion Silies, Christian Berger   +10 more
doaj   +1 more source

ChIP-seq analysis using PbAP2-FG2::GFP.

, 2023
(A) IGV images showing peaks identified in the ChIP-seq experiment 1 and 2 of PbAP2-FG2 on the chromosome 1. Read coverage for the ChIP data is shown. (B) IDR1D analysis between the ChIP-seq experiment 1 and 2.
Izumi Kaneko (121023), Shiroh Iwanaga (121019), Tsubasa Nishi (12133480), Masao Yuda (70356)   +3 more
core   +1 more source

Natural Variation in ZmASB1 Links Tryptophan Metabolism to Root Growth and Drought Tolerance in Maize

Advanced Science, EarlyView.
Natural variation in the maize ZmASB1 promoter regulates tryptophan accumulation, root development, and drought tolerance through a tryptophan–auxin pathway. A 5‐bp InDel alters ZmDOF17 binding and promoter activity, and the favorable allele is enriched during breeding. These findings reveal a cis‐regulatory mechanism linking amino acid metabolism with
Xiaoyi Yang, Houmiao Wang, Xiaomin Zhang, Yunyun Wang, Yimei Tian, Baoqing Wang, Tianze Zhu, Shuai Fang, Wei Li, Wenye Rui, Yining Zhang, Dan Sun, Haoxin Gao, Yuxuan Li, Zhongtao Jia, Zefeng Yang, Chenwu Xu, Pengcheng Li   +17 more
wiley   +1 more source

Androgen receptor DNA binding and chromatin accessibility profiling in prostate cancer

Genomics Data, 2016
Prostate cancer (PCa) is the second most common cancer in men. The Androgen Receptor (AR) is the major driver of PCa and the main target of therapy in the advanced setting.
Ekaterina Nevedomskaya, Suzan Stelloo, Henk G. van der Poel, Jeroen de Jong, Lodewyk F.A. Wessels, Andries M. Bergman, Wilbert Zwart   +6 more
doaj   +1 more source

Loss of E3 Ubiquitin Ligase RINES via CpG Methylation Relieves Suppression of STAT3 and MYC, Facilitating Multiple Tumorigeneses

Advanced Science, EarlyView.
Dysregulated protein modifications drive tumorigenesis. RINES, an E3 ubiquitin ligase, represses tumor cell proliferation and metastasis by facilitating RING domain‐dependent, ubiquitin–proteasome‐mediated degradation of STAT3 and MYC, which consequently restrains cancer stemness and oncogenic progression.
Lili Li, Ka Man Ng, Xingsheng Shu, Xiaoxue Chai, Kai Yau Wong, Gopesh Srivastava, Anthony T.C. Chan, Wai Yee Chan, Qian Tao   +8 more
wiley   +1 more source

Practical guidelines for the comprehensive analysis of ChIP-seq data.

PLoS Computational Biology, 2013
Mapping the chromosomal locations of transcription factors, nucleosomes, histone modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the key tasks of modern biology, as evidenced by the Encyclopedia of DNA Elements (ENCODE)
Timothy Bailey, Pawel Krajewski, Istvan Ladunga, Celine Lefebvre, Qunhua Li, Tao Liu, Pedro Madrigal, Cenny Taslim, Jie Zhang   +8 more
doaj   +1 more source

Bioinformatic Analysis for Profiling Drug-induced Chromatin Modification Landscapes in Mouse Brain Using ChlP-seq Data

Bio-Protocol, 2017
Chromatin immunoprecipitation followed by massively parallel sequencing (ChIP-seq) is a powerful technology to profile genome-wide chromatin modification patterns and is increasingly being used to study the molecular mechanisms of brain diseases such as ...
Yong-Hwee Loh, Jian Feng, Eric Nestler , Li Shen   +3 more
doaj   +1 more source

ChIP-seq bigwig files

ChIP-seq of Pygo2,H3K4me3, p53 ...
Sheng Liu (12728327)
core   +1 more source

Perm-seq analysis of GM12878 Ctcf and Sin3a ChIP-seq dataset with DNase-seq and Histone ChIP-seq priors.

, 2015
(a) Heatmap of normalized DNase-seq and Histone ChIP-seq read counts for the [-1000 bps, +1000 bps] window anchored at GM12878 Ctcf peak summits depicted by the vertical dashed lines.
Constanza Rojo (816204), Ye Zheng (169955), Rene Welch (816203), Xin Zeng (174828), Sündüz Keleş (3436304), Bo Li (112195), Colin N. Dewey (257084)   +6 more
core   +1 more source

Gm26550 Modulates Learning and Memory by Increasing IGF1 mRNA Expression and Stability in Nrf2−/− Mice

Advanced Science, EarlyView.
The present study shows that Nrf2 directly binds to the Gm26550 promoter, thereby activating Gm26550 transcription and increasing its expression. Mechanistically, Gm26550 promotes IGF1 expression by functionally antagonizing miR‐26a‐5p‐mediated repression and sequestering the RBP KHSRP, thereby enhancing hippocampal neuronal synaptic plasticity and ...
Hongfang Wang, Ziyao Wang, Dongyue Zuo, Zhaowen Su, Bowen Song, Jiamin Gao, Yizhou Zhang, Ruiting Zhao, Linjie Sun, Mengdi Li, Yirui Fan, Dandan Geng, Lei Wang   +12 more
wiley   +1 more source