Results 1 to 10 of about 309 (119)

Calibrating tetranucleotide-frequency distances for metagenomic binning with right-skewed distribution models. [PDF]

Bioinform Adv
Hajjaji O, Al-Soudy AS, Daoud R, Benhida R, Mokhtar MM.   +4 more
europepmc   +1 more source

Protocol for the assessment of the impact of mycotoxins and glyphosate residues on the gut microbiome and resistome of European fallow deer. [PDF]

STAR Protoc
Tóth AG, Paholcsek M, Solymosi N, Stágel A, Gömbös P, Posta K, Lakatos I, Nagy SÁ, Ferenczi S, Szőke Z.   +9 more
europepmc   +1 more source

CoSAG-nf: a scalable nextflow pipeline for co-assembly, optimization, and interactive visualization of high-throughput single-cell genomes. [PDF]

Bioinformatics
Xu L, Quan ZX.
europepmc   +1 more source

Fast and efficient Borrelia chromosome recovery from tick samples using whole-genome amplification. [PDF]

Cell Rep Methods
Melis S, Bunduc CC, Mottarlini L, Vendramin A, Vumbaca M, Mileto I, Hepner S, Margos G, Fingerle V, Sing A, Prati P, Bandi C, Sambri V, Gaiarsa S, Baldanti F, Bellinzona G, Sassera D.   +16 more
europepmc   +1 more source

Agentic AI for trustworthy synthetic microbial genomics: a perspective on generation, validation, and governance. [PDF]

Front Bioinform
Sufi F.
europepmc   +1 more source

Community-driven updates for comprehensive long-read metagenomics and enhanced binning in nf-core/mag v5. [PDF]

Bioinformatics
Alvarez Saravia D, Rosenbaum A, Straub D, Downie J, Borry M, Fedewa G, Hübner A, Lundin D, Yepes-García J, McDonald J, Nahnsen S, Köhn L, Uribe-Paredes R, Navarrete MA, Warinner C, nf-core community, Fellows Yates JA.   +16 more
europepmc   +1 more source

Genome-guided antimicrobial potential of Bacillus stercoris from coastal sand with activity against multidrug-resistant bacteria, including MRSA. [PDF]

Int Microbiol
Valença CAS, Andrade B, Viana M, Barbosa AAT, Dolabella SS, Severino P, Ménard G, Augagneur Y, Brenig B, Souto EB, Azevedo V, Guedon E, Jain S.   +12 more
europepmc   +1 more source

Comparative genomic analyses provide new insights into phylogenetic and functional diversification in genus <i>Fenollaria</i>. [PDF]

Front Microbiol
Wang S, Kang L, Li M, Zhou X, Li B, Wang F, Meng J, Li C, Yang K.   +8 more
europepmc   +1 more source

Mapler: a pipeline for assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads. [PDF]

Bioinformatics
Maurice N, Lemaitre C, Vicedomini R, Frioux C.   +3 more
europepmc   +1 more source

Isolation and characterization of <i>Novosphingobium oxfordense</i> sp. nov. and <i>Novosphingobium mississippiense</i> sp. nov. from soil, with LC-MS/MS and genome-based investigation of their glycosphingolipid production. [PDF]

Front Microbiol
Ali T, Boudreau PD.
europepmc   +1 more source