Results 91 to 100 of about 309 (119)

nf-core/magmap: Map metatranscriptomes to large collections of genomes. [PDF]

Bioinformatics
Di Leo D, Nilsson E, Westmeijer G, Pinhassi J, Lundin D.   +4 more
europepmc   +1 more source

Microbial single-cell omics in situ. [PDF]

Cell Genom
Lan X, Liang Q, He J, Wu J, Zhang X, Li F, Li L, Zhao G, Guo R, Jia H.   +9 more
europepmc   +1 more source

Distinct signatures in the human gut and oral microbiomes of gastric cancer. [PDF]

Cell Rep Med
Qin Y, Zhang YX, Liu LP, Xie YH, Ma XY, Hao Y, Zhao LC, Dong JJ, He Y, Sun K, Zhong H, Zhu S, Liu M, Fang JY, Zhou CB.   +14 more
europepmc   +1 more source

Resolution of MALDI-TOF MS compared to whole genome sequencing for the identification of Vibrio parahaemolyticus strains isolated from oysters. [PDF]

Arch Microbiol
King T, Pedrueza M, Rahman M, Oh B, LaMontagne MG.   +4 more
europepmc   +1 more source

Metagenomes and metagenome-assembled genomes from tidal lagoons at a New York City waterfront park. [PDF]

PeerJ
Kong S, Abrams E, Binik Y, Cappelli C, Chu M, Cornett T, Culbertson I, Garcia E, Henry J, Lam K, Lampman DB, Morenko G, Rivera I, Swift T, Torres I, Velez R, Waxman E, Wessely S, Yuen A, Lardner CK, Weissman JL.   +20 more
europepmc   +1 more source

Comparative phenotypic and genomic analysis of the methanogen Methanomethylovorans thermophila L2FAW and its phylogenomic placement within the Genome Taxonomy Database. [PDF]

Access Microbiol
Wunderer M, Mullaymeri A, Wagner AO, Prem EM.   +3 more
europepmc   +1 more source

Interpreting antimicrobial resistance from bacterial whole-genome sequencing: prediction tools, database fragmentation, analytical trade-offs, and harmonized reporting. [PDF]

Front Microbiol
Alshehri AA.
europepmc   +1 more source

PopMAG: a Nextflow pipeline for population genetics analysis based on metagenome-assembled genomes. [PDF]

Bioinform Adv
Sabogal-Rodriguez D, Caro-Quintero A.
europepmc   +1 more source

GlobDB: a comprehensive species-dereplicated microbial genome resource. [PDF]

Bioinform Adv
Speth DR, Pullen N, Aroney STN, Coltman BL, Osvatic J, Woodcroft BJ, Rattei T, Wagner M.   +7 more
europepmc   +1 more source

Metagenome-assembled genomes enhance bacterial read decontamination and variant calling in oral samples. [PDF]

iScience
An Z, Cha JH, Lee KH, Lee I.
europepmc   +1 more source