Nanopore MinION Sequencing Generates a White Spot Syndrome Virus Genome from a Pooled Cloacal Swab Sample of Domestic Chickens in South Africa [PDF]
Microorganisms, 2023 White spot syndrome virus is a highly contagious pathogen affecting shrimp farming worldwide. The host range of this virus is primarily limited to crustaceans, such as shrimps, crabs, prawns, crayfish, and lobsters; however, several species of non ...
Ravendra P Chauhan +2 more
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16S rRNA gene-based assessment of common broiler chicken sampling methods: Evaluating intra-flock sample size, cecal pair similarity, and cloacal swab similarity to other alimentary tract locations [PDF]
Frontiers in Physiology, 2022 16S rRNA gene sequencing for characterization of microbiomes has become more common in poultry research and can be used to both answer specific research questions and help inform experimental design choices.
Brian B Oakley
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Multiple novel filamentous phages detected in the cloacal swab samples of birds using viral metagenomics approach [PDF]
Virology Journal, 2021 Members of the family Inoviridae (inoviruses) are characterized by their unique filamentous morphology and infection cycle. The viral genome of inovirus is able to integrate into the host genome and continuously releases virions without lysing the host ...
Jian Zeng +4 more
doaj +5 more sources
Detection of multidrug resistant Klebsiella pneumoniae isolated from duck cloacal swab in Jombang, Indonesia [PDF]
Open Veterinary JournalBackground: Klebsiella pneumoniae bacteria is one of the pathogens that are often found in poultry and can cause various diseases in animals and humans. Currently, there are many reports of increasing multidrug resistance (MDR) K.
Naomi Lan Noviana Thesia +11 more
doaj +4 more sources
Complete Genome Sequence of a Phapecoctavirus Isolated from a Pigeon Cloacal Swab Sample [PDF]
Microbiology Resource Announcements, 2021 The complete genome sequence of a bacteriophage in the genus Phapecoctavirus (family Myoviridae ) isolated from a cloacal swab specimen from a domestic pigeon ( Columba livia f.
Anthony Khalifeh +2 more
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Cloacal Swabs Are Unreliable Sources for Estimating Lower Gastro-Intestinal Tract Microbiota Membership and Structure in Broiler Chickens [PDF]
Microorganisms, 2020 The gastrointestinal microbiota of chickens plays a central role in health and performance. Cloacal swabs, due to their proximity to the ceca (a vital site of functional activity), are an alternative, non-invasive method used for assaying microbial ...
Travis Williams, Giridhar Athrey
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Detection of invA virulence gene of multidrug-resistant Salmonella species isolated from the cloacal swab of broiler chickens in Blitar district, East Java, Indonesia [PDF]
Veterinary World, 2021 Background and Aim: The increasing number of multidrug-resistant (MDR) Salmonella species on poultry farms in Indonesia has caused concern regarding human health.
Freshindy Marissa Wibisono +6 more
doaj +2 more sources
Biogeographic variation in the diet of juvenile blacktip sharks across the Galapagos Archipelago [PDF]
Scientific ReportsJuvenile blacktip sharks (Carcharhinus limbatus) are highly abundant in the mangrove-fringed bays throughout the Galapagos Archipelago, utilizing these habitats as nursery grounds.
Savannah J. Ryburn +7 more
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Detection of the blaTEM gene on multidrug-resistant Escherichia coli producing extended spectrum β-lactamase from ducks in live poultry markets in Surabaya, Indonesia [PDF]
Open Veterinary JournalBackground: Escherichia coli bacteria are normal flora in the digestive tract of animals and humans, while some E. coli isolates are pathogenic, causing disease in humans and animals. E.
Irfan Alias Kendek +13 more
doaj +2 more sources
Design and validation of a universal influenza virus enrichment probe set and its utility in deep sequence analysis of primary cloacal swab surveillance samples of wild birds [PDF]
Virology, 2018 Jacqueline M Nolting +2 more
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