Plants Play Stronger Effects on Soil Fungal than Bacterial Communities and Co-Occurrence Network Structures in a Subtropical Tree Diversity Experiment [PDF]
Microbiology Spectrum, 2022 Increasing biodiversity loss profoundly affects community structure and ecosystem functioning. However, the differences in community assembly and potential drivers of the co-occurrence network structure of soil fungi and bacteria in association with tree
Huiyun Gan +7 more
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Earth microbial co-occurrence network reveals interconnection pattern across microbiomes [PDF]
Microbiome, 2020 Background Microbial interactions shape the structure and function of microbial communities; microbial co-occurrence networks in specific environments have been widely developed to explore these complex systems, but their interconnection pattern across ...
Bin Ma +11 more
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Topological Properties of Co-Occurrence Networks in Published Gene Expression Signatures
Bioinformatics and Biology Insights, 2008 Meta-analysis of high-throughput gene expression data is often used for the interpretation of proprietary gene expression data sets. We have recently shown that co-occurrence patterns of gene expression in published cancer-related gene expression ...
Francesco Acquati, Heiko Muller
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Genetic co-occurrence network across sequenced microbes. [PDF]
PLoS Computational Biology, 2011 The phenotype of any organism on earth is, in large part, the consequence of interplay between numerous gene products encoded in the genome, and such interplay between gene products affects the evolutionary fate of the genome itself through the resulting
Pan-Jun Kim, Nathan D Price
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Rhizosphere Microbiome Co-Occurrence Network Analysis across a Tomato Domestication Gradient [PDF]
MicroorganismsWhen plant-available phosphorus (P) is lost from a soil solution, it often accumulates in the soil as a pool of unavailable legacy P. To acquire legacy P, plants employ recovery strategies, such as forming associations with soil microbes.
Mary M. Dixon +3 more
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Difficulty in inferring microbial community structure based on co-occurrence network approaches
BMC Bioinformatics, 2019 Background Co-occurrence networks—ecological associations between sampled populations of microbial communities inferred from taxonomic composition data obtained from high-throughput sequencing techniques—are widely used in microbial ecology.
Hokuto Hirano, Kazuhiro Takemoto
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Topic Network Analysis Based on Co-Occurrence Time Series Clustering
Mathematics, 2022 Traditional topic research divides similar topics into the same cluster according to clustering or classification from the perspective of users, which ignores the deep relationship within and between topics. In this paper, topic analysis is achieved from
Weibin Lin +4 more
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Fluvial network organization imprints on microbial co-occurrence networks [PDF]
Proceedings of the National Academy of Sciences, 2014 Recent studies highlight linkages among the architecture of ecological networks, their persistence facing environmental disturbance, and the related patterns of biodiversity.
Quince, Christopher +24 more
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An ingredient co-occurrence network gives insight into e-liquid flavor complexity [PDF]
Tobacco Induced DiseasesIntroduction Part of the appeal of e-cigarettes lies in their available flavors. To achieve attractive flavors, e-liquids contain many different flavoring agents, which allow many flavoring combinations.
Jeroen L. A. Pennings +3 more
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Using co‐occurrence network topology in assessing ecological stress in benthic macroinvertebrate communities [PDF]
Ecology and Evolution, 2019 Ecological monitoring of streams has often focused on assessing the biotic integrity of individual benthic macroinvertebrate (BMI) communities through local measures of diversity, such as taxonomic or functional richness.
Ariel Levi Simons +2 more
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