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Fine decomposition of the inbreeding and the coancestry coefficients by using the tabular method
Conservation Genetics, 2010In this paper we describe a simple algorithm to decompose both inbreeding and coancestry coefficients. The decomposition is performed in pieces coming from each ancestor, including the founders and the Mendelian sampling terms of non-founders. The original algorithm presented here replaces the conventional tabular method formulae with an original set ...
Miguel Angel Toro +1 more
exaly +3 more sources
Estimation of coefficient of coancestry using molecular markers in maize
Theoretical and Applied Genetics, 1993The coefficient of coancestry (fAB) between individuals A and B is the classical measure of genetic relationship. fAB is determined from pedigree records and is the probability that random alleles at the same locus in A and B are copies of the same ancestral allele or identical by descent (ibd).
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1987
We can now evaluate the coancestry between specific relatives. Consider first the coancestry between an individual and one of its offspring, f(PO). If A and B are the parents of C, fAC is an example of a parent-offspring coancestry coefficient. From Eq. (25.5), $${f_{AC}} = \left( {1/2} \right)\left( {{f_{AA}} + {f_{AB}}} \right).$$
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We can now evaluate the coancestry between specific relatives. Consider first the coancestry between an individual and one of its offspring, f(PO). If A and B are the parents of C, fAC is an example of a parent-offspring coancestry coefficient. From Eq. (25.5), $${f_{AC}} = \left( {1/2} \right)\left( {{f_{AA}} + {f_{AB}}} \right).$$
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Tabular Calculation of Coancestry
1987If L is the offspring of J × K, and if we know the coancestries of A and B with J and K, we can calculate the coancestries of A and B with L, using the first averaging rule, Eq. (25.5). These calculations lend themselves readily to a tabular format: $$\begin{gathered} \,\,\,\,\,\,\,\,\,\,\,\,\,J\,\,\,\,\,\,\,\,\,\,\,K\,\,\,\,\,\,\,\,\,\,\,L \hfill \
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230. Inbreeding and coancestry trends in Nordic Holstein
Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP), 2022S. Tenhunen +5 more
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Molecular Ecology Resources, 2010
AbstractThe software package coancestry implements seven relatedness estimators and three inbreeding estimators to estimate relatedness and inbreeding coefficients from multilocus genotype data. Two likelihood estimators that allow for inbred individuals and account for genotyping errors are for the first time included in this user‐friendly program for
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AbstractThe software package coancestry implements seven relatedness estimators and three inbreeding estimators to estimate relatedness and inbreeding coefficients from multilocus genotype data. Two likelihood estimators that allow for inbred individuals and account for genotyping errors are for the first time included in this user‐friendly program for
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Evaluating different genomic coancestry matrices for managing genetic variability in turbot
Aquaculture, 2020Jesús Fernández +2 more
exaly
Estimation of effective population size from the rate of coancestry in pedigreed populations
Journal of Animal Breeding and Genetics, 2011Juan Pablo Gutierrez +2 more
exaly

