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A Hitchhiker's guide to RNA-RNA structure and interaction prediction tools. [PDF]
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Analyzing modular RNA structure reveals low global structural entropy in microRNA sequence. [PDF]
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Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding. [PDF]
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Local RNA structure alignment with incomplete sequence. [PDF]
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Evolving stochastic context--free grammars for RNA secondary structure prediction. [PDF]
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CENTROIDFOLD: a web server for RNA secondary structure prediction. [PDF]
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Ambivalent covariance models. [PDF]
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The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective. [PDF]
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