Knotify: An Efficient Parallel Platform for RNA Pseudoknot Prediction Using Syntactic Pattern Recognition. [PDF]
Methods Protoc, 2022 Andrikos C +5 more
europepmc +1 more source
A Hitchhiker's guide to RNA-RNA structure and interaction prediction tools. [PDF]
Brief Bioinform, 2023 Tieng FYF +5 more
europepmc +1 more source
Analyzing modular RNA structure reveals low global structural entropy in microRNA sequence. [PDF]
J Bioinform Comput Biol, 2011 Shaw TI +4 more
europepmc +1 more source
Local RNA structure alignment with incomplete sequence. [PDF]
Bioinformatics, 2009 Kolbe DL, Eddy SR.
europepmc +1 more source
Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding. [PDF]
J Math Biol, 2014 Poznanović S, Heitsch CE.
europepmc +1 more source
Evolving stochastic context--free grammars for RNA secondary structure prediction. [PDF]
BMC Bioinformatics, 2012 Wj Anderson J +4 more
europepmc +1 more source
CENTROIDFOLD: a web server for RNA secondary structure prediction. [PDF]
Nucleic Acids Res, 2009 Sato K, Hamada M, Asai K, Mituyama T.
europepmc +1 more source
Ambivalent covariance models. [PDF]
BMC Bioinformatics, 2015 Janssen S, Giegerich R.
europepmc +1 more source
The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective. [PDF]
RNA Biol, 2013 Rivas E.
europepmc +1 more source
Query-dependent banding (QDB) for faster RNA similarity searches. [PDF]
PLoS Comput Biol, 2007 Nawrocki EP, Eddy SR.
europepmc +1 more source