The Complete Amomum kravanh Chloroplast Genome Sequence and Phylogenetic Analysis of the Commelinids [PDF]
Molecules, 2017 Amomum kravanh is an important edible and medicinal herb, the dried fruits of which are widely used in traditional herbal medicine as cardamom. We sequenced and analyzed the complete chloroplast (cp) genome of A.
Shilin Chen, Xiwen Li, Li Xiwen
exaly +4 more sources
The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants [PDF]
Genome Biology, 2017 Background The evolution of gene body methylation (gbM), its origins, and its functional consequences are poorly understood. By pairing the largest collection of transcriptomes (>1000) and methylomes (77) across Viridiplantae, we provide novel insights ...
Robert Schmitz +2 more
exaly +4 more sources
Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes [PDF]
Frontiers in Plant Science, 2022 We assess relationships among 192 species in all 12 monocot orders and 72 of 77 families, using 602 conserved single-copy (CSC) genes and 1375 benchmarking single-copy ortholog (BUSCO) genes extracted from genomic and transcriptomic datasets ...
Prakash Raj Timilsena +23 more
doaj +2 more sources
RNA editing in the chloroplast of Asian Palmyra palm (Borassus flabellifer) [PDF]
Genetics and Molecular Biology, 2020 We have identified 46 RNA editing sites located in 20 chloroplast (cp) genes of Borassus flabellifer (Asian Palmyra palm), family Arecaceae, and tested these genes for supporting phylogenetic study among the commelinids. Among the 46 sites, 43 sites were
Arpakorn Sakulsathaporn +4 more
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The complete chloroplast genome of Eichhornia crassipes (Pontederiaceae) and phylogeny of commelinids [PDF]
Mitochondrial DNA. Part B. Resources, 2019 Eichhornia crassipes is a floating aquatic plant native to the American tropics. Here we reported and characterized the first complete chloroplast (cp) genome of Eichhornia crassipes and analyzed the phylogenomic relationship of Commelinids based on ...
Qing Ma, Yin Lu
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Conserved sequence motifs in the abiotic stress response protein late embryogenesis abundant 3. [PDF]
PLoS ONE, 2020 LEA3 proteins, a family of abiotic stress proteins, are defined by the presence of a tryptophan-containing motif, which we name the W-motif. We use Pfam LEA3 sequences to search the Phytozome database to create a W-motif definition and a LEA3 sequence ...
Karamjeet K Singh, Steffen P Graether
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Evolution, Systematics and Classification of Commelinales (Commelinids, Monocots) Based on a Giant Morphological Taxon-Character Matrix [PDF]
PlantsDespite being strongly recovered as monophyletic by molecular studies, Commelinales completely lacks any morphological support or circumscription. It is also the Monocot order that suffered the most striking changes across different classification ...
Marco O. O. Pellegrini
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Comparative Genome Analysis and Phylogenetic Relationship of Order Liliales Insight from the Complete Plastid Genome Sequences of Two Lilies (Lilium longiflorum and Alstroemeria aurea) [PDF]
PLoS ONE, 2013 Monocots are one of the most diverse, successful and economically important clades of angiosperms. We attempt to analyse the complete plastid genome sequences of two lilies and their lengths were 152,793bp in Lilium longiflorum (Liliaceae) and 155,510bp ...
Joo-Hwan Kim, Jung Sung Kim
exaly +2 more sources
A reference genome of Commelinales provides insights into the commelinids evolution and global spread of water hyacinth (Pontederia crassipes) [PDF]
GigaScienceKazunori Okada, Bk Song, Aldo Merotto
exaly +2 more sources
Evolutionary Expansion of WRKY Gene Family in Banana and Its Expression Profile during the Infection of Root Lesion Nematode, Pratylenchus coffeae. [PDF]
PLoS ONE, 2016 The WRKY family of transcription factors orchestrate the reprogrammed expression of the complex network of defense genes at various biotic and abiotic stresses.
Raja Kaliyappan +5 more
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