Results 31 to 40 of about 814,413 (282)

Multi-dimensional geometric complexity in urban transportation systems

open access: yesJournal of Transport and Land Use, 2017
Transportation networks serve as windows into the complex world of urban systems. By properly characterizing a road network, one can better understand its encompassing urban system.
Farideddin Peiravian, Sybil Derrible
doaj   +1 more source

Growth-coupled anaerobic production of isobutanol from glucose in minimal medium with Escherichia coli

open access: yesBiotechnology for Biofuels and Bioproducts, 2023
Background The microbial production of isobutanol holds promise to become a sustainable alternative to fossil-based synthesis routes for this important chemical. Escherichia coli has been considered as one production host, however, due to redox imbalance,
Simon Boecker   +2 more
doaj   +1 more source

Opinion manipulation on Farsi Twitter

open access: yesScientific Reports, 2023
For Iranians and the Iranian diaspora, the Farsi Twittersphere provides an important alternative to state media and an outlet for political discourse. But this understudied online space has become an opinion manipulation battleground, with diverse actors
Amirhossein Farzam   +4 more
doaj   +1 more source

Integrating personalized gene expression profiles into predictive disease-associated gene pools

open access: yesnpj Systems Biology and Applications, 2017
Molecular Medicine: Personalized expression profiles elucidate disease heterogeneity A comparison of gene expression profiles of different patients with the same disease reveals a combinatorial model for disease heterogeneity. A framework is developed to
Jörg Menche   +7 more
doaj   +1 more source

Dynamical methods for target control of biological networks

open access: yesRoyal Society Open Science, 2023
Estimating the influence that individual nodes have on one another in a Boolean network is essential to predict and control the system’s dynamical behaviour, for example, detecting key therapeutic targets to control pathways in models of biological ...
Thomas Parmer, Filippo Radicchi
doaj   +1 more source

Analyzing and Resolving Infeasibility in Flux Balance Analysis of Metabolic Networks

open access: yesMetabolites, 2022
Flux balance analysis (FBA) is a key method for the constraint-based analysis of metabolic networks. A technical problem may occur in FBA when known (e.g., measured) fluxes of certain reactions are integrated into an FBA scenario rendering the underlying
Steffen Klamt, Axel von Kamp
doaj   +1 more source

Error-correcting decoders for communities in networks

open access: yesApplied Network Science, 2019
As recent work demonstrated, the task of identifying communities in networks can be considered analogous to the classical problem of decoding messages transmitted along a noisy channel.
Krishna C. Bathina, Filippo Radicchi
doaj   +1 more source

On out-of-equilibrium phenomena in pseudogap phase of complex SYK+U model

open access: yesPhysics Letters B, 2023
In this Letter we consider the out-of-equilibrium phenomena in the complex Sachdev-Ye-Kitaev (SYK) model supplemented with the attractive Hubbard interaction (SYK+U). This model provides the clear-cut transition from non-Fermi liquid phase in pure SYK to
Artem Alexandrov, Alexander Gorsky
doaj   +1 more source

Complex networks

open access: yes, 2015
This article deals with complex networks, and in particular small world and scale free networks. Various networks exhibit the small world phenomenon, including social networks and gene expression networks. The local ordering property of small world networks is typically associated with regular networks such as a 2D square lattice.
Rodgers, GJ, Nagao, T
openaire   +3 more sources

A mixed-modeling framework for analyzing multitask whole-brain network data [PDF]

open access: yesNetwork Neuroscience, 2019
The emerging area of brain network analysis considers the brain as a system, providing profound insight into links between system-level properties and health outcomes.
Sean L. Simpson   +2 more
doaj   +1 more source

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