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Controlled vocabularies and semantics in systems biology [PDF]
Molecular Systems Biology, 2011 The use of computational modeling to describe and analyze biological systems is at the heart of systems biology. Model structures, simulation descriptions and numerical results can be encoded in structured formats, but there is an increasing need to ...
Mélanie Courtot +26 more
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Applied Sciences, 2020 Context: The use of controlled vocabularies (CVs) aims to increase the quality of the specifications of the software requirements, by producing well-written documentation to reduce both ambiguities and complexity.
Arshad Ahmad +3 more
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From chaos to clarity: schema-constrained AI for auditable biomedical evidence extraction from full-text PDFs [PDF]
BMC Medical Research MethodologyBackground Biomedical evidence synthesis depends on accurate extraction of methodological, laboratory, and outcome variables from full-text research articles.
Pouria Mortezaagha +3 more
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Collaborative Metadata Definition using Controlled Vocabularies, and Ontologies [PDF]
Research Ideas and Outcomes, 2022 Data's role in a variety of technical and research areas is undeniably growing. This can be seen, for example, in the increased investments in the development of data-intensive analytical methods such as artificial intelligence (Zhang 2022), as well as ...
Ilia Bagov +2 more
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Standardisation of bioacoustic terminology for insects [PDF]
Biodiversity Data Journal, 2020 After reviewing the published literature on sound production in insects, a standardised terminology and controlled vocabularies have been created. This combined terminology has potential for use in automated identification systems, evolutionary studies ...
Edward Baker, David Chesmore
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Journal of eScience Librarianship, 2022 Objective: Journal publishers within many sciences are increasingly expecting data to be deposited into repositories that support the FAIR principles.
Matthew Mayernik, Yauheniya Liapich
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Thesaurus and subject heading lists as Linked Data
Transinformação, 2021 Most libraries put a lot of effort into developing subject headings or thesauri, which are used to index and retrieve information. Nevertheless, in the library field, controlled vocabularies are associated to authority records as authority files.
Everton Rodrigues Barbosa +3 more
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Fully connecting the Observational Health Data Science and Informatics (OHDSI) initiative with the world of linked open data [PDF]
Genomics & Informatics, 2019 The usage of controlled biomedical vocabularies is the cornerstone that enables seamless interoperability when using a common data model across multiple data sites.
Juan M. Banda
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BMC Bioinformatics, 2008 Background Many bioinformatics applications rely on controlled vocabularies or ontologies to consistently interpret and seamlessly integrate information scattered across public resources.
Rebholz-Schuhmann Dietrich +5 more
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