Controlled vocabularies and semantics in systems biology [PDF]
Molecular Systems Biology, 2011 The use of computational modeling to describe and analyze biological systems is at the heart of systems biology. Model structures, simulation descriptions and numerical results can be encoded in structured formats, but there is an increasing need to ...
Mélanie Courtot +26 more
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Applied Sciences, 2020 Context: The use of controlled vocabularies (CVs) aims to increase the quality of the specifications of the software requirements, by producing well-written documentation to reduce both ambiguities and complexity.
Arshad Ahmad +3 more
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Facilitating the development of controlled vocabularies for metabolomics technologies with text mining [PDF]
BMC Bioinformatics, 2008 Background Many bioinformatics applications rely on controlled vocabularies or ontologies to consistently interpret and seamlessly integrate information scattered across public resources.
Rebholz-Schuhmann Dietrich +5 more
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Collaborative Metadata Definition using Controlled Vocabularies, and Ontologies [PDF]
Research Ideas and Outcomes, 2022 Data's role in a variety of technical and research areas is undeniably growing. This can be seen, for example, in the increased investments in the development of data-intensive analytical methods such as artificial intelligence (Zhang 2022), as well as ...
Ilia Bagov +2 more
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Identifying translational science through embeddings of controlled vocabularies. [PDF]
J Am Med Inform Assoc, 2019 OBJECTIVE Translational science aims at "translating" basic scientific discoveries into clinical applications. The identification of translational science has practicality such as evaluating the effectiveness of investments made into large programs like ...
Ke Q.
europepmc +3 more sources
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. [PDF]
Biochim Biophys Acta, 2014 This paper focuses on the use of controlled vocabularies (CVs) and ontologies especially in the area of proteomics, primarily related to the work of the Proteomics Standards Initiative (PSI).
Mayer G +12 more
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JMIR Med Inform, 2017 Background Extracting structured data from narrated medical reports is challenged by the complexity of heterogeneous structures and vocabularies and often requires significant manual effort.
Zheng S +5 more
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Controlled vocabularies in bioinformatics: a case study in the gene ontology [PDF]
, 2004 The automatic integration of information resources in the life sciences is one of the most challenging goals facing biomedical informatics today. Controlled vocabularies have played an important role in realizing this goal, by making it possible to draw ...
Barry Smith, Anand Kumar
semanticscholar +3 more sources
Controlled Vocabularies for DDI 3: Enhancing Machine-Actionability
IASSIST Quarterly, 2010 Controlled Vocabularies for DDI 3: Enhancing Machine ...
Taina Jaaskelainen +2 more
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Exploiting Statistical Methodologies and Controlled Vocabularies for Prioritized Functional Analysis of Genomic Experiments: the StRAnGER Web Application. [PDF]
Front Neurosci, 2011 StRAnGER is a web application for the automated statistical analysis of annotated gene profiling experiments, exploiting controlled biological vocabularies, like the Gene Ontology or the KEGG pathways terms.
Chatziioannou AA, Moulos P.
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