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Insect genome content phylogeny and functional annotation of core insect genomes
Molecular Phylogenetics and Evolution, 2016Twenty-one fully sequenced and well annotated insect genomes were examined for genome content in a phylogenetic context. Gene presence/absence matrices and phylogenetic trees were constructed using several phylogenetic criteria. The role of e-value on phylogenetic analysis and genome content characterization is examined using scaled e-value cutoffs and
Rob DeSalle +3 more
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Genome Evolution in Malaria Parasites: I. Core Genome Components
2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, 2009Malaria is one of the most common infectious diseases that affect millions of people globally. It is caused by protozoan parasites in the genus Plasmodium. Existing antimalarials have lost efficacy thanks to the emergence of resistant parasite populations and the incidence of the disease is on the rise.
Hong Cai, Jianying Gu, Yufeng Wang
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Core and variable components in prokaryotic genomes
2011Acinetobacter baumannii and Stenotrophomonas maltophilia are opportunistic pathogens responsable for several hospital-acquired infections. We performed Extensive comparative analyses were performed in silico to elucidate the cromosomal organization of both species, and identify core and variable genome component in each. In the case of S.
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The Sorghum Genome Sequence: A Core Resource for Saccharinae Genomics
2012As a taxon noted for large and complex polyploid genomes, a facile genomic model is of especially great importance to the Saccharinae. The genome of Sorghum bicolor (sorghum) offers numerous advantages as such a model, with a physical size (about 730 mbp) that is only moderately larger than that of rice, and enjoying the same low level of gene ...
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