Results 1 to 10 of about 2,770 (184)

A streamlined culturomics case study for the human gut microbiota research [PDF]

Scientific Reports
Bacterial culturomics is a set of techniques to isolate and identify live bacteria from complex microbial ecosystems. Despite its potential to revolutionize microbiome research, bacterial culturomics has significant challenges when applied to human gut ...
Hyunjoon Park, Soyoung Yeo, Chang Beom Ryu, Chul Sung Huh   +3 more
doaj   +4 more sources

Thomasclavelia ramosa and alcohol-related hepatocellular carcinoma: a microbial culturomics study [PDF]

Gut Pathogens
Background Gut microbiota alteration is implicated in the pathogenesis of alcoholic liver disease (ALD) and associated hepatocellular carcinoma (HCC). No study has characterized the dysbiosis associated with ALD by microbial culturomics, which certifies ...
Reham Magdy Wasfy, Anissa Abdoulaye, Patrick Borentain, Babacar Mbaye, Maryam Tidjani Alou, Aurelia Caputo, Claudia Andrieu, Giovanna Mottola, Anthony Levasseur, Matthieu Million, Rene Gerolami   +10 more
doaj   +3 more sources

Coupling culturomics and metagenomics sequencing to characterize the gut microbiome of patients with cancer treated with immune checkpoint inhibitors [PDF]

Gut Pathogens
Background The gut microbiome represents a novel biomarker for melanoma and non-small cell lung cancer (NSCLC) patients treated with immune checkpoint inhibitors (ICI).
Khoudia Diop, Babacar Mbaye, Somayeh Nili, Alysé Filin, Myriam Benlaifaoui, Julie Malo, Anne Sophie Renaud, Wiam Belkaid, Sebastian Hunter, Meriem Messaoudene, Karla A. Lee, Arielle Elkrief, Bertrand Routy   +12 more
doaj   +3 more sources

Expanding conservation culturomics and iEcology from terrestrial to aquatic realms.

PLoS Biology, 2020
The ongoing digital revolution in the age of big data is opening new research opportunities. Culturomics and iEcology, two emerging research areas based on the analysis of online data resources, can provide novel scientific insights and inform ...
Ivan Jarić, Uri Roll, Robert Arlinghaus, Jonathan Belmaker, Yan Chen, Victor China, Karel Douda, Franz Essl, Sonja C Jähnig, Jonathan M Jeschke, Gregor Kalinkat, Lukáš Kalous, Richard Ladle, Robert J Lennox, Rui Rosa, Valerio Sbragaglia, Kate Sherren, Marek Šmejkal, Andrea Soriano-Redondo, Allan T Souza, Christian Wolter, Ricardo A Correia   +21 more
doaj   +3 more sources

Culturomics: A critical approach in studying the roles of human and animal microbiota [PDF]

Animal Nutriomics
The rise of sequencing technologies has greatly contributed to our knowledge of the microbiota and its role in animal health and production. However, many members of the microbiota have historically been considered “unculturable.” Culturomics can be ...
Samantha Howe, Ziyu Liu, Bin Zuo, Jiangchao Zhao   +3 more
doaj   +2 more sources

Investigation of co-existing bacteria in platelets by employing long-term culturomics and metagenomics [PDF]

Frontiers in Cellular and Infection Microbiology
IntroductionBacterial contamination of platelets presents a substantial risk in transfusion medicine. Conventional detection approaches have limitations in sensitivity and bacterial coverage.
Qiqi Wang, Mengyi Zhao, Anqing Liu, Anqing Liu, Yuwei Zhao, Zhenxin Fan, Yang Huang, Zhan Gao, Miao He   +8 more
doaj   +2 more sources

An optimized culturomics strategy for isolation of human milk microbiota [PDF]

Frontiers in Microbiology
Viable microorganisms and a diverse microbial ecosystem found in human milk play a crucial role in promoting healthy immune system and shaping the microbial community in the infant’s gut.
Fan Wang, Lingmin Yu, Yuting Ren, Qianwen Zhang, Shanshan He, Minlei Zhao, Zhili He, Qi Gao, Jianguo Chen   +8 more
doaj   +2 more sources

Integrating metagenomics and culturomics to uncover the soil bacterial community in Asparagus cochinchinensis cultivation [PDF]

Frontiers in Microbiology
Asparagus cochinchinensis is a medicinal plant in China, which has gained attention owing its protective effect in human health. However, there are seldom studies to systematically reveal the rhizosphere bacterial community of A. cochinchinensis. In this
Jingsheng Yu, Shuai Yang, Xiaoyong Zhang, Xiaoyong Zhang, Xiongwei Liu, Xiongwei Liu, Xuebo Tang, Liuyan Wang, Jinglan Chen, Huimin Luo, Changmin Liu, Chi Song   +11 more
doaj   +2 more sources

Culturable Human Microorganisms and the Impact of Transportation Conditions on Cultivability [PDF]

Microorganisms
The composition of the human microbiome is a critical health indicator, and culture-independent methodologies have substantially advanced our understanding of human-associated microorganisms.
Xibei Fan, Ning Lv, Zhexue Quan
doaj   +2 more sources

Culturomics from field-grown crop plants using dilution to extinction, two-step library preparation and amplicon sequencing. [PDF]

Microbiology (Reading)
Lopez-Echartea E, Dusek N, Misialek M, Mahmud-Un-Nabi MA, Williamson R, Marathe K, Geddes BA.   +6 more
europepmc   +3 more sources