Results 41 to 50 of about 2,770 (184)

Exploring the Microbiota of Diabetic Foot Infections With Culturomics [PDF]

Frontiers in Cellular and Infection Microbiology, 2018
The purpose of this prospective observational study was to evaluate the richness and diversity of bacteria in samples from diabetic foot infections using a culturomics approach. Bacterial culture findings from wound samples were analyzed together with clinical characteristics and treatment outcomes. We included 43 patients admitted to a French referral
Joanne Jneid, Nadim Cassir, Sophie Schuldiner, Nathalie Jourdan, Albert Sotto, Albert Sotto, Jean-Philippe Lavigne, Jean-Philippe Lavigne, Bernard La Scola   +8 more
openaire   +4 more sources

Extensive culturomics of 8 healthy samples enhances metagenomics efficiency.

PLoS ONE, 2019
Molecular approaches have long led to the assumption that the human gut microbiota is dominated by uncultivable bacteria. The recent advent of large-scale culturing methods, and in particular that of culturomics have demonstrated that these prokaryotes ...
Ami Diakite, Grégory Dubourg, Niokhor Dione, Pamela Afouda, Sara Bellali, Issa Isaac Ngom, Camille Valles, Matthieu Million, Anthony Levasseur, Frédéric Cadoret, Jean-Christophe Lagier, Didier Raoult   +11 more
doaj   +1 more source

Culturomics and Amplicon-Based Metagenomic Insights into the Bacteria of Soils with High Yield of Oryza sativa L. subsp. Japonica

Agronomy, 2023
The bacterial community in the paddy field agroecosystem has a pivotal role in the growth adaptability strategy of rice. Here, we studied the bacterial community structure composition of rhizosphere and non-rhizosphere soil samples from super rice in ...
Li Zhang, Qingmei Cao, Wenzhong Ruan, Yapeng Guo, Yan Zhuang, Yan Li, Zhiyong Ruan   +6 more
doaj   +1 more source

Culturomics of the pig tonsil microbiome identifies new species and an untapped source of novel antimicrobials. [PDF]

Microbiome
de Oliveira IMF, Fredriksen S, Gutiérrez MF, Harmsen HJM, Boekhorst J, van Baarlen P, Wells JM.   +6 more
europepmc   +2 more sources

Caveats on conservation culturomics

Biological Conservation, 2021
COVID-19 restrictions in 2020 saw declines in visits and Google® searches for national parks in many countries, depending on lockdown rules and social structures (Souza et al., 2021). I should like to express concern that their title phrase, “No visit, no interest” could potentially prove misleading, with political risks for conservation.
openaire   +3 more sources

Corynebacterium senegalense sp. nov. and Arthrobacter senegalensis sp. nov., two new Actinobacteria isolated from skin swab from the palm of hand

New Microbes and New Infections, 2019
Corynebacterium senegalense strain Marseille-P4329T (= CSURP4329) and Arthrobacter senegalensis strain Marseille-P4329T (= CSURP4198) are new species first isolated from human skin.
C. Ndiaye, N.S. Fall, E. Kuete, C.I. Lo, D. Raoult, C. Sokhna, J.-C. Lagier   +6 more
doaj   +1 more source

Proof of Concept of Culturomics Use of Time of Care [PDF]

Frontiers in Cellular and Infection Microbiology, 2020
Culturomics, a high throughput culture method with rapid identification of the colonies by Matrix Assisted Laser Desorption Ionization/Time Of Flight Mass Spectrometry (MALDI-TOF MS), has demonstrated its contribution to the exploration of the gut microbiota over the past 10 years.
Sabrina Naud, Sabrina Naud, Saber Khelaifia, Saber Khelaifia, Maxime Descartes Mbogning Fonkou, Maxime Descartes Mbogning Fonkou, Niokhor Dione, Niokhor Dione, Jean-Christophe Lagier, Jean-Christophe Lagier, Didier Raoult, Didier Raoult   +11 more
openaire   +4 more sources

‘Collinsella provencensis’ sp. nov., ‘Parabacteroides bouchesdurhonensis’ sp. nov. and ‘Sutterella seckii,’ sp. nov., three new bacterial species identified from human gut microbiota

New Microbes and New Infections, 2018
We report here the main characteristics of ‘Collinsella provencensis’ strain Marseille-P3740 (CSUR P3740), ‘Parabacteroides bouchesdurhonensis’ strain Marseille-P3763 (CSUR P3763) and ‘Sutterella seckii’ strain Marseille-P3660 (CSUR P3660), which were ...
N. Dione, I.I. Ngom, C. Valles, F. Cadoret, P.E. Fournier, D. Raoult, J.C. Lagier   +6 more
doaj   +1 more source

Mining semantics for culturomics [PDF]

Proceedings of the 2013 international workshop on Mining unstructured big data using natural language processing, 2013
The massive amounts of text data made available through the Google Books digitization project have inspired a new field of big-data textual research. Named culturomics, this field has attracted the attention of a growing number of scholars over recent years. However, initial studies based on these data have been criticized for not referring to relevant
Lars, Borin, Devdatt, Dubhashi, Markus, Forsberg, Johansson, Richard, Dimitrios, Kokkinakis, Nugues, Pierre   +5 more
openaire   +4 more sources

‘Lactomassilus timonensis,’ a new anaerobic bacterial species isolated from the milk of a healthy African mother

New Microbes and New Infections, 2018
We here report the main characteristics of a new anaerobic bacterial genus and species ‘Lactomassilus timonensis,’ strain Marseille-P4641T (CSUR = P4641), isolated by microbial culturomics from the milk of a 35-year-old healthy lactating mother from Mali.
A.H. Togo, A. Camara, S. Konaté, O.K. Doumbo, D. Raoult, M. Million   +5 more
doaj   +1 more source