Expression of Concern: 'Gracilibacillus phocaeensis' sp. nov., 'Sediminibacillus massiliensis' sp. nov. and 'Virgibacillus ndiopensis' sp. nov., three halophilic species isolated from salty human stools by culturomics. [PDF]
New Microbes New Infecteuropepmc +2 more sources
Optimization of Culturomics Strategy in Human Fecal Samples [PDF]
Frontiers in Microbiology, 2019 Most bacteria in the human gut are difficult to culture, and culturomics has been designed to overcome this issue. Culturomics makes it possible to obtain living bacteria for further experiments, unlike metagenomics. However, culturomics is work-intensive, which prevents its wide application.
Ni Han +12 more
openaire +4 more sources
An effective culturomics approach to study the gut microbiota of mammals [PDF]
Research in Microbiology, 2020 The microbial characterization of the mammal's gut is an emerging research area, wherein culturomics methodologies applied to human samples are transposed to the animal context without improvement. In this work, using Egyptian mongoose as a model, we explore wet bench conditions to define an effective experimental design based on culturomics and DNA ...
Pereira, André C., Cunha, Mónica V.
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Expression of Concern: Description of Gorbachella massiliensis' gen. nov., sp. nov., Fenollaria timonensis' sp. nov., Intestinimonas timonensis' sp. nov. and Collinsella ihuae' sp. nov. isolated from healthy fresh stools with culturomics. [PDF]
New Microbes New Infecteuropepmc +2 more sources
Yearlong analysis of bacterial diversity in hospital sink drains: culturomics, antibiotic resistance and implications for infection control. [PDF]
Front MicrobiolLaço J +3 more
europepmc +2 more sources
Expanding Culturomics from Gut to Extreme Environmental Settings
mSystems, 2021 With the advent of metagenomics, a quest began to identify the dynamics of the microbial communities in different ecological niches. Altogether, this has resulted in identification of microorganisms but is limited to only a small number of phylogenetic groups that can be easily cultured.
Utkarsh Sood, Princy Hira, Roshan Kumar
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Pathogens, 2020 Background: In recent years, culture-independent molecular techniques have been developed to investigate microbiota considered uncultivable. However, the data in the literature suggest that molecular techniques and cultural methods target different ...
Leonardo Martellacci +6 more
doaj +1 more source
New Microbes and New Infections, 2021 In 2019, by culturing a skin swab from the hand of a 30-year-old healthy woman using the culturomic method, we isolated the new bacterial strain Marseille-Q2057T (= CSUR-Q2057).
M. Boxberger +4 more
doaj +1 more source
Beneficial Microbes, 2017 Abstract The human gut microbiota is increasingly being recognised to play an important role in maintaining health. The families Lachnospiraceae and Oscillospiraceae in particular, are often reduced in disease states but are relatively poorly represented in culture collections.
N. Plomp +9 more
openaire +4 more sources
Visions and open challenges for a knowledge-based culturomics [PDF]
International Journal on Digital Libraries, 2015 The concept of culturomics was born out of the availability of massive amounts of textual data and the interest to make sense of cultural and language phenomena over time. Thus far however, culturomics has only made use of, and shown the great potential of, statistical methods.
Tahmasebi, Nina N. +12 more
openaire +4 more sources