Results 31 to 40 of about 2,026,606 (113)

A RESTful application programming interface for the PubMLST molecular typing and genome databases

open access: yesDatabase J. Biol. Databases Curation, 2017
Molecular typing is used to differentiate microorganisms at the subspecies or strain level for epidemiological investigations, infection control, public health and environmental sampling.
K. Jolley, J. Bray, M. Maiden
semanticscholar   +1 more source

A collection of database industrial techniques and optimization approaches of database operations [PDF]

open access: yes, 2018
Databases play an essential role in our society today. Databases are embedded in sectors like corporations, institutions, and government organizations, among others. These databases are used for our video and audio streaming platforms, social gaming, finances, cloud storage, e-commerce, healthcare, economy, etc. It is therefore imperative that we learn
arxiv   +1 more source

Post-translational modifications in proteins: resources, tools and prediction methods

open access: yesDatabase J. Biol. Databases Curation, 2021
Posttranslational modifications (PTMs) refer to amino acid side chain modification in some proteins after their biosynthesis. There are more than 400 different types of PTMs affecting many aspects of protein functions.
Shahin Ramazi, J. Zahiri
semanticscholar   +1 more source

Causal reasoning and symbolic relationships in Medieval Illuminations Raisonnement causale et relations symboliques dans les Enluminures médiévales [PDF]

open access: yesJournal of Data Mining and Digital Humanities, 2019
This work applies knowledge engineering’s techniques to medieval illuminations. Inside it, an illumination is considered as a knowledge graph which was used by some elites in the Middle Ages to represent themselves as a social group and exhibit the ...
Djibril Diarra   +2 more
doaj  

Improving taxonomic accuracy for fungi in public sequence databases: applying ‘one name one species’ in well-defined genera with Trichoderma/Hypocrea as a test case

open access: yesDatabase J. Biol. Databases Curation, 2017
The ITS (nuclear ribosomal internal transcribed spacer) RefSeq database at the National Center for Biotechnology Information (NCBI) is dedicated to the clear association between name, specimen and sequence data.
B. Robbertse   +6 more
semanticscholar   +1 more source

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF

open access: yesDatabase J. Biol. Databases Curation, 2016
Domain-specific databases are essential resources for the biomedical community, leveraging expert knowledge to curate published literature and provide access to referenced data and knowledge. The limited scope of these databases, however, poses important
Sefa Kılıç   +10 more
semanticscholar   +1 more source

GrainGenes: a data-rich repository for small grains genetics and genomics

open access: yesDatabase J. Biol. Databases Curation, 2022
As one of the US Department of Agriculture-Agricultural Research Service flagship databases, GrainGenes (https://wheat.pw.usda.gov) serves the data and community needs of globally distributed small grains researchers for the genetic improvement of the ...
Eric Yao   +13 more
semanticscholar   +1 more source

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

open access: yesDatabase J. Biol. Databases Curation, 2016
Arthropods interact with humans at different levels with highly beneficial roles (e.g. as pollinators), as well as with a negative impact for example as vectors of human or animal diseases, or as agricultural pests.
Patrice Baa-Puyoulet   +8 more
semanticscholar   +1 more source

NCBI Taxonomy: a comprehensive update on curation, resources and tools

open access: yesDatabase J. Biol. Databases Curation, 2020
The National Center for Biotechnology Information (NCBI) Taxonomy includes organism names and classifications for every sequence in the nucleotide and protein sequence databases of the International Nucleotide Sequence Database Collaboration.
C. Schoch   +15 more
semanticscholar   +1 more source

Fishing for data and sorting the catch: assessing the data quality, completeness and fitness for use of data in marine biogeographic databases

open access: yesDatabase J. Biol. Databases Curation, 2015
Being able to assess the quality and level of completeness of data has become indispensable in marine biodiversity research, especially when dealing with large databases that typically compile data from a variety of sources. Very few integrated databases
L. Vandepitte   +7 more
semanticscholar   +1 more source

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