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e-DNA Meta-Barcoding: From NGS Raw Data to Taxonomic Profiling
2014In recent years, thanks to the essential support provided by the Next-Generation Sequencing (NGS) technologies, Metagenomics is enabling the direct access to the taxonomic and functional composition of mixed microbial communities living in any environmental niche, without the prerequisite to isolate or culture the single organisms.
Bruno Fosso +2 more
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DNA barcoding markers: A comprehensive review and taxonomic classification across species
Computational Biology and ChemistryDNA barcoding has revolutionized species identification and biodiversity assessment by employing short, standardized genetic sequences as molecular markers. Since its inception by Hebert in 2003, it has become a cornerstone of taxonomy, ecology, conservation, agriculture, and medicine.
Varsha Rani +2 more
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2022
DNA barcoding is a versatile approach that has revolutionized taxonomy and other akin topics in biology and ecology, due to its simplicity and relatively costless procedures. The method consists in the production of one or a few amplicons from informative genetic regions via Sanger sequencing. These markers are selected because they tend to evolve at a
Laura, Núñez-Pons +4 more
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DNA barcoding is a versatile approach that has revolutionized taxonomy and other akin topics in biology and ecology, due to its simplicity and relatively costless procedures. The method consists in the production of one or a few amplicons from informative genetic regions via Sanger sequencing. These markers are selected because they tend to evolve at a
Laura, Núñez-Pons +4 more
openaire +2 more sources
Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes
European Journal of Soil Biology, 2012The family Lumbricidae accounts for the most abundant earthworms in grasslands and agricultural ecosystems in the Paleartic region. Therefore, they are commonly used as model organisms in studies of soil ecology, biodiversity, biogeography, evolution, conservation, soil contamination and ecotoxicology.
Marcos Pérez-Losada +4 more
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Mitochondrial DNA, 2012
The Pánuco-Tamesí complex in eastern Mexico is globally recognized as an important ecoregion due to its high level of endemism. In this study, DNA barcodes were generated for 152 individuals of 31 species. Additionally, 170 DNA barcodes for the related species available in the Barcode of Life Database (BOLD) system were included to test the ability of ...
Omar, Mejía +2 more
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The Pánuco-Tamesí complex in eastern Mexico is globally recognized as an important ecoregion due to its high level of endemism. In this study, DNA barcodes were generated for 152 individuals of 31 species. Additionally, 170 DNA barcodes for the related species available in the Barcode of Life Database (BOLD) system were included to test the ability of ...
Omar, Mejía +2 more
openaire +2 more sources
Zootaxa, 2015
The barklouse genus Stenopsocus Hagen is the most diverse group of the family Stenopsocidae, with 139 described species recorded from China in a previous study. However, due to the considerably similar morphology, species identification in this genus is problematic.
Liang, Feiyang +4 more
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The barklouse genus Stenopsocus Hagen is the most diverse group of the family Stenopsocidae, with 139 described species recorded from China in a previous study. However, due to the considerably similar morphology, species identification in this genus is problematic.
Liang, Feiyang +4 more
openaire +3 more sources
Molecular Phylogenetics and Evolution, 2013
The functionality of standard zoological DNA barcoding practice (the identification of unknown specimens by comparison of COI sequences) is contingent on working barcode databases with sufficient taxonomic coverage. It has already been established that the main barcoding repositories, NCBI and BOLD, are devoid of data for many animal groups but the ...
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The functionality of standard zoological DNA barcoding practice (the identification of unknown specimens by comparison of COI sequences) is contingent on working barcode databases with sufficient taxonomic coverage. It has already been established that the main barcoding repositories, NCBI and BOLD, are devoid of data for many animal groups but the ...
openaire +2 more sources
Will DNA barcoding meet taxonomic needs?
Science, 2019H T, Pinheiro +3 more
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Circulating tumor DNA in advanced solid tumors: Clinical relevance and future directions
Ca-A Cancer Journal for Clinicians, 2021Heather A Parsons +2 more
exaly
Inferring taxonomic placement from DNA barcoding aiding in discovery of new taxa
Methods in Ecology and Evolution, 2023Tommaso Rigon, Alessandro Zito
exaly