Editorial: Chromosome architecture and DNA topology in prokaryotes [PDF]
Frontiers in Microbiology, 2023 Tamara Basta +2 more
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Regulation of DNA Topology in Archaea: State of the Art and Perspectives [PDF]
Molecular MicrobiologyTamara Basta
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A review on nonlinear DNA physics [PDF]
Royal Society Open Science, 2020 The study and the investigation of structural and dynamical properties of complex systems have attracted considerable interest among scientists in general and physicists and biologists in particular.
Dalibor Chevizovich +4 more
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Data of transcriptional effects of the merbarone-mediated inhibition of TOP2
Data in Brief, 2022 Type II DNA topoisomerases relax topological stress by transiently gating DNA passage in a controlled cut-and-reseal mechanism that affects both DNA strands.
Fernando M. Delgado-Chaves +6 more
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Nucleosome spacing periodically modulates nucleosome chain folding and DNA topology in circular nucleosome arrays [PDF]
Journal of Biological Chemistry, 2019 VÍCTOR Zhurkin, , Davood Norouzi
exaly +2 more sources
TRF2-Mediated Control of Telomere DNA Topology as a Mechanism for Chromosome-End Protection [PDF]
Molecular Cell, 2016 Eric Gilson +2 more
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Topogami: Topologically Linked DNA Origami [PDF]
ACS Nanoscience Au, 2021 DNA origami is a widely used DNA nanotechnology that allows construction of two-dimensional and three-dimensional nanometric shapes. The designability and rigidity of DNA origami make it an ideal material for construction of topologically linked molecules such as catenanes, which are attractive for their potential as motors and molecular machines ...
Yusuke Sakai +4 more
openaire +3 more sources
The Effect of DNA Topology on Observed Rates of R-Loop Formation and DNA Strand Cleavage by CRISPR Cas12a [PDF]
Genes, 2019 Mark Szczelkun +2 more
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Topoisomerase IIα represses transcription by enforcing promoter-proximal pausing
Cell Reports, 2021 Summary: Accumulation of topological stress in the form of DNA supercoiling is inherent to the advance of RNA polymerase II (Pol II) and needs to be resolved by DNA topoisomerases to sustain productive transcriptional elongation.
Andrés Herrero-Ruiz +6 more
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A topological analysis of difference topology experiments of condensin with topoisomerase II
Biology Open, 2020 An experimental technique called difference topology combined with the mathematics of tangle analysis has been used to unveil the structure of DNA bound by the Mu transpososome. However, difference topology experiments can be difficult and time consuming.
Soojeong Kim, Isabel K. Darcy
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