Results 51 to 60 of about 50,367 (275)

Path histogram distance and complete subtree histogram distance for rooted labelled caterpillars

Journal of Information and Telecommunication, 2020
A rooted labelled caterpillar (a caterpillar, for short) is a rooted labelled unordered tree transformed to a path after removing all the leaves in it. In this paper, we discuss two histogram distance between caterpillars.
Taiga Kawaguchi, Takuya Yoshino, Kouichi Hirata   +2 more
doaj   +1 more source

Transferrin receptor 1‐mediated iron uptake supports thermogenic activation in human cervical‐derived adipocytes

FEBS Letters, EarlyView.
In this study, we found that human cervical‐derived adipocytes maintain intracellular iron level by regulating the expression of iron transport‐related proteins during adrenergic stimulation. Melanotransferrin is predicted to interact with transferrin receptor 1 based on in silico analysis.
Rahaf Alrifai, Mizuki Seo, Gyath Karadsheh, Fachrur Rizal Mahendra, Máté Á Demény, Ferenc Győry, János András Mótyán, László Fésüs, Endre Kristóf, Rini Arianti   +9 more
wiley   +1 more source

Near-Linear Time Insertion-Deletion Codes and (1+$\varepsilon$)-Approximating Edit Distance via Indexing

, 2019
We introduce fast-decodable indexing schemes for edit distance which can be used to speed up edit distance computations to near-linear time if one of the strings is indexed by an indexing string $I$.
Approximating, Efficiently, Goldwasser Shafi, Haeupler Bernhard, Haeupler Bernhard, Polylogarithmic, Selected   +6 more
core   +1 more source

Edit distance with move operations

Journal of Discrete Algorithms, 2002
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Shapira, Dana, Storer, James A.
openaire   +1 more source

Structural insights into an engineered feruloyl esterase with improved MHET degrading properties

FEBS Letters, EarlyView.
A feruloyl esterase was engineered to mimic key features of MHETase, enhancing the degradation of PET oligomers. Structural and computational analysis reveal how a point mutation stabilizes the active site and reshapes the binding cleft, expading substrate scope.
Panagiota Karampa, Konstantinos Makryniotis, Theofani‐Iosifina Sousani, Evangelos Topakas, Vangelis Daskalakis, Maria Dimarogona   +5 more
wiley   +1 more source

Efficient Algorithms for Computing the Inner Edit Distance of a Regular Language via Transducers

Algorithms, 2018
The concept of edit distance and its variants has applications in many areas such as computational linguistics, bioinformatics, and synchronization error detection in data communications.
Lila Kari, Stavros Konstantinidis, Steffen Kopecki, Meng Yang   +3 more
doaj   +1 more source

Methylation biomarkers can distinguish pleural mesothelioma from healthy pleura and other pleural pathologies

Molecular Oncology, EarlyView.
We developed and validated a DNA methylation–based biomarker panel to distinguish pleural mesothelioma from other pleural conditions. Using the IMPRESS technology, we translated this panel into a clinically applicable assay. The resulting two classifier models demonstrated excellent performance, achieving high AUC values and strong diagnostic accuracy.
Janah Vandenhoeck, Nele De Meulenaere, Thomas Vanpoucke, Joe Ibrahim, Dieter Peeters, Suresh Krishan Yogeswaran, Wen Wen, Paul Van Schil, Jeroen M. H. Hendriks, Jo Raskin, Jan van Meerbeeck, Guy Van Camp, Ken Op de Beeck   +12 more
wiley   +1 more source

3GOLD: optimized Levenshtein distance for clustering third-generation sequencing data

BMC Bioinformatics, 2022
Background Third-generation sequencing offers some advantages over next-generation sequencing predecessors, but with the caveat of harboring a much higher error rate. Clustering-related sequences is an essential task in modern biology.
Robert Logan, Zoe Fleischmann, Sofia Annis, Amy Wangsness Wehe, Jonathan L. Tilly, Dori C. Woods, Konstantin Khrapko   +6 more
doaj   +1 more source

Detection of circulating tumor DNA in colorectal cancer patients using a methylation‐specific droplet digital PCR multiplex

Molecular Oncology, EarlyView.
We developed a cost‐effective methylation‐specific droplet digital PCR multiplex assay containing tissue‐conserved and tumor‐specific methylation markers. The assay can detect circulating tumor DNA with high accuracy in patients with localized and metastatic colorectal cancer.
Luisa Matos do Canto, Louise Raunkilde, Jan Lindebjerg, Mads Malik Aagaard, Christina Therkildsen, Jakob Kleif, Lars Henrik Jensen, Torben Frøstrup Hansen, Rikke Fredslund Andersen   +8 more
wiley   +1 more source

String correction using the Damerau-Levenshtein distance

BMC Bioinformatics, 2019
Background In the string correction problem, we are to transform one string into another using a set of prescribed edit operations. In string correction using the Damerau-Levenshtein (DL) distance, the permissible edit operations are: substitution ...
Chunchun Zhao, Sartaj Sahni
doaj   +1 more source