Results 1 to 10 of about 15,749 (125)

Multi-Omic Insights Into Mediterranean Diet-Associated Microbiota. [PDF]

Mol Nutr Food Res
Mediterranean diet (MD) influences the composition of the gut mycobiome. Key foods of MD are related to bacterial and fungal composition. Combining metagenomics and metatranscriptomics tracks the gene expression profiles of gut microbiota. Metatranscriptomics identifies the transcriptionally active members of the microbiota that overexpressed genes ...
Alvarez-Sala A, Jiménez-Hernández N, Artacho A, Ruiz-Pérez S, Pascual EC, Pons J, Sorlí JV, Corella D, Gosalbes MJ.   +8 more
europepmc   +2 more sources

Complete genome sequence of Halorhabdus utahensis type strain (AX-2). [PDF]

, 2009
Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H.
Anderson, Iain, Brettin, Thomas, Bristow, Jim, Bruce, David, Chain, Patrick, Chang, Yun-Juan, Chen, Amy, Chen, Feng, Cheng, Jan-Fang, Chertkov, Olga, Copeland, Alex, Detter, John C, Eisen, Jonathan A, Glavina Del Rio, Tijana, Goodwin, Lynne, Göker, Markus, Han, Cliff, Hauser, Loren, Hugenholtz, Philip, Ivanova, Natalia, Jeffries, Cynthia D, Klenk, Hans-Peter, Kyrpides, Nikos C, Land, Miriam, Lapidus, Alla, Lucas, Susan, Markowitz, Victor, Mavromatis, Konstantinos, Nolan, Matt, Ovchinnikova, Galina, Palaniappan, Krishna, Pati, Amrita, Pitluck, Sam, Pomrenke, Helga, Rohde, Manfred, Tice, Hope, Tindall, Brian J   +36 more
core   +2 more sources

Taxonomy of anaerobic digestion microbiome reveals biases associated with the applied high throughput sequencing strategies [PDF]

, 2018
In the past few years, many studies investigated the anaerobic digestion microbiome by means of 16S rRNA amplicon sequencing. Results obtained from these studies were compared to each other without taking into consideration the followed procedure for ...
Angelidaki, Irini, Campanaro, Stefano, Kougias, Panagiotis G., Treu, Laura, Zhu, Xinyu   +4 more
core   +3 more sources

Insights into the Ecological Roles and Evolution of Methyl-Coenzyme M Reductase-Containing Hot Spring Archaea [PDF]

, 2019
Several recent studies have shown the presence of genes for the key enzyme associated with archaeal methane/alkane metabolism, methyl-coenzyme M reductase (Mcr), in metagenome-assembled genomes (MAGs) divergent to existing archaeal lineages.
Chen, Ya-Ting, Evans, Paul N., Goh, Kian Mau, Hedlund, Brian P., Hozzein, Wael, Hua, Zheng-Shuang, Huang, Min-Jun, Jiao, Jian-Yu, Li, Wen-Jun, Li, Yu-Xian, Mao, Yan-Ping, Qi, Yan-Ling, Qu, Yan-Ni, Rao, Yang-Zhi, Shu, Wen-Sheng, Tyson, Gene W., Wang, Yu-Lin, Zhang, Tong   +17 more
core   +3 more sources

Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica [PDF]

, 2014
Archaea are the least understood members of the microbial community in Antarctic mineral soils. Although their occurrence in Antarctic coastal soils has been previously documented, little is known about their distribution in soils across the McMurdo Dry ...
Barrett, John E., Cary, S. Craig, Herbold, Craig W., Lee, Charles Kai-Wu, McDonald, Ian R., Richter, Ingrid   +5 more
core   +2 more sources

Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons. [PDF]

, 2019
Thaumarchaeota are responsible for a significant fraction of ammonia oxidation in the oceans and in soils that range from alkaline to acidic. However, the adaptive mechanisms underpinning their habitat expansion remain poorly understood.
Bartlett, Douglas H, Eloe-Fadrosh, Emiley A, Hall, Richard, Han, Ping, Heiner, Cheryl, Herbold, Craig W, Huang, Li, Ingalls, Anitra E, Ji, Junbin, Jia, Zhongjun, Jung, Man-Young, Li, Meng, Liu, Linmeng, Liu, Yang, Lu, Lu, Martens-Habbena, Willm, Qin, Wei, Ren, Yi, Rhee, Sung-Keun, Stahl, David A, Wagner, Michael, Wang, Baozhan, Yan, Xin, Zheng, Yue, Zhou, Xue   +24 more
core   +2 more sources

Different carboxyl-rich alicyclic molecules proxy compounds select distinct bacterioplankton for oxidation of dissolved organic matter in the mesopelagic Sargasso Sea [PDF]

, 2020
© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Liu, S., Parsons, R., Opalk, K., Baetge, N., Giovannoni, S., Bolanos, L. M., Kujawinski, E.
Baetge, Nicholas, Bolaños, Luis M., Carlson, Craig A., Giovannoni, Stephen J., Halewood, Elisa, Kujawinski, Elizabeth B., Liu, Shuting, Longnecker, Krista, Lu, YueHan, Opalk, Keri, Parsons, Rachel J.   +10 more
core   +1 more source

Analysis of gut microbiota in rheumatoid arthritis patients. Disease-related dysbiosis and modifications induced by etanercept [PDF]

, 2018
A certain number of studies were carried out to address the question of how dysbiosis could affect the onset and development of rheumatoid arthritis (RA), but little is known about the reciprocal influence between microbiota composition and ...
D'Amelio, R, Di Rosa, R, Laganà, B, Panebianco, C, Pazienza, V, Picchianti-Diamanti, A, Salemi, S, Salerno, G, Sgrulletti, Mayla, Sorgi, Ml, Terracciano, F, Tropea, A   +11 more
core   +1 more source

Changes in microbial (Bacteria and Archaea) plankton community structure after artificial dispersal in grazer-free microcosms [PDF]

, 2017
Microbes are considered to have a global distribution due to their high dispersal capabilities. However, our knowledge of the way geographically distant microbial communities assemble after dispersal in a new environment is limited.
Courties, Claude, Genitsaris, Savvas, Karayanni, Hera, Kormas, Konstantinos A., Meziti, Alexandra, Spatharis, Sofie   +5 more
core   +2 more sources

Primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton. [PDF]

, 2018
Primers targeting the 16S small subunit ribosomal RNA marker gene, used to characterize bacterial and archaeal communities, have recently been re-evaluated for marine planktonic habitats.
Carlson, Craig A, Nelson, Craig E, Wear, Emma K, Wilbanks, Elizabeth G   +3 more
core   +1 more source