Results 1 to 10 of about 67,014 (277)
An efficient error correction algorithm using FM-index [PDF]
BMC Bioinformatics, 2017 Background High-throughput sequencing offers higher throughput and lower cost for sequencing a genome. However, sequencing errors, including mismatches and indels, may be produced during sequencing.
Yao-Ting Huang, Yu-Wen Huang
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Pan-genome de Bruijn graph using the bidirectional FM-index [PDF]
BMC Bioinformatics, 2023 Background Pan-genome graphs are gaining importance in the field of bioinformatics as data structures to represent and jointly analyze multiple genomes. Compacted de Bruijn graphs are inherently suited for this purpose, as their graph topology naturally ...
Lore Depuydt +3 more
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An optimized FM-index library for nucleotide and amino acid search [PDF]
Algorithms for Molecular Biology, 2021 Background Pattern matching is a key step in a variety of biological sequence analysis pipelines. The FM-index is a compressed data structure for pattern matching, with search run time that is independent of the length of the database text ...
Tim Anderson, Travis J. Wheeler
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Fast construction of FM-index for long sequence reads. [PDF]
Bioinformatics, 2014 Summary: We present a new method to incrementally construct the FM-index for both short and long sequence reads, up to the size of a genome. It is the first algorithm that can build the index while implicitly sorting the sequences in the reverse ...
Li H.
europepmc +6 more sources
FMLRC: Hybrid long read error correction using an FM-index [PDF]
BMC Bioinformatics, 2018 Background Long read sequencing is changing the landscape of genomic research, especially de novo assembly. Despite the high error rate inherent to long read technologies, increased read lengths dramatically improve the continuity and accuracy of genome ...
Jeremy R. Wang +3 more
doaj +5 more sources
Pfp-fm: an accelerated FM-index [PDF]
Algorithms for Molecular BiologyFM-indexes are crucial data structures in DNA alignment, but searching with them usually takes at least one random access per character in the query pattern.
Aaron Hong +5 more
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Assessment of Fetal Malnutrition Based on the CANSCORE Index and Anthropometric Indices [PDF]
Journal of Fasting and Health, 2022 Introduction: To prevent the adverse effects of fetal malnutrition (FM), its management and early diagnosis by reliable tools are essential. The present study aimed to identify the rate of malnutrition in a referral maternity center in Iran using ...
Roya Chopani Dastgerdi +4 more
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Association of Lean Body Mass and Fat Mass With 1-Year Mortality Among Patients With Heart Failure
Frontiers in Cardiovascular Medicine, 2022 BackgroundPrior studies have found an unexplained inverse or U-shaped relationship between body mass index (BMI) and mortality in heart failure (HF) patients.
Yilan Ge +8 more
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Obesity Facts, 2022 Introduction: Lipedema is a poorly known condition. Diagnosis is based almost exclusively on clinical criteria, which may be subjective and not always reliable.
Giacomo Buso +10 more
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Carotid Arterial Stiffness and Cardiometabolic Profiles in Women with Fibromyalgia
Biomedicines, 2021 Background: The present study aimed to evaluate the association between FM and cardiometabolic risk factors and carotid arterial stiffness in FM patients. Methods: The cardiometabolic risk profile was defined based on the Adult Treatment Panel III panel.
Yunkyung Kim, Geun-Tae Kim, Jihun Kang
doaj +1 more source