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Cache-Efficient FM-Index Variants for Mapping of DNA Sequences
2019Mapping reads to a reference genome is the first and very important step in genome analysis. One of the most used data structure for DNA read mapping is the FM-index. To this day many different variants of the FM-index exist. In the proposed paper we introduce two new variants of the FM-index suitable especially for DNA sequences.
Jozef Sitarčík, Mária Lucká
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Memory–Efficient FM-Index Construction for Reference Genomes
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2022Arghya Kusum Das +2 more
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Mitigating memory latency in FM Index search [PDF]
2024 IEEE 20th International Conference on e-Science (e-Science)Sfiligoi, Igor +2 more
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LZ78 factorization using the FM-index
2015Nunes, Daniel Saad Nogueira +3 more
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Multivariate Standardized Drought Index: A parametric multi-index model
Advances in Water Resources, 2013Zengchao Hao, Amir AghaKouchak
exaly
Improving the sensitivity of the Barthel Index for stroke rehabilitation
Journal of Clinical Epidemiology, 1989Frank M Vanclay
exaly