Results 61 to 70 of about 4,504,185 (191)

Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly [PDF]

, 2012
Motivation: Eugene Myers in his string graph paper (Myers, 2005) suggested that in a string graph or equivalently a unitig graph, any path spells a valid assembly.
Depristo, Durbin, Gingeras, H. Li, Homer, Idury, Iqbal, Lam, Levy, Myers, Myers, Myers, Peltola, Pevzner, Staden, Zerbino   +15 more
core   +1 more source

Relative Select

, 2015
Motivated by the problem of storing coloured de Bruijn graphs, we show how, if we can already support fast select queries on one string, then we can store a little extra information and support fairly fast select queries on a similar ...
Boucher, Christina, Bowe, Alexander, Gagie, Travis, Manzini, Giovanni, Sirén, Jouni   +4 more
core   +1 more source

Relationship of Fat Mass Index and Fat Free Mass Index With Body Mass Index and Association With Function, Cognition and Sarcopenia in Pre-Frail Older Adults

Frontiers in Endocrinology, 2021
BackgroundBody mass index (BMI) is an inadequate marker of obesity, and cannot distinguish between fat mass, fat free mass and distribution of adipose tissue. The purpose of this study was twofold.
Reshma Aziz Merchant, Reshma Aziz Merchant, Santhosh Seetharaman, Lydia Au, Michael Wai Kit Wong, Beatrix Ling Ling Wong, Li Feng Tan, Matthew Zhixuan Chen, Shu Ee Ng, John Tshon Yit Soong, Richard Jor Yeong Hui, Sing Cheer Kwek, John E. Morley   +12 more
doaj   +1 more source

Compressed Text Indexes:From Theory to Practice!

, 2007
A compressed full-text self-index represents a text in a compressed form and still answers queries efficiently. This technology represents a breakthrough over the text indexing techniques of the previous decade, whose indexes required several times the ...
Ferragina, Paolo, Gonzalez, Rodrigo, Navarro, Gonzalo, Venturini, Rossano   +3 more
core   +4 more sources

Impact of fibromyalgia on functioning in obese patients undergoing comprehensive rehabilitation. [PDF]

PLoS ONE, 2014
A possible link between fibromyalgia (FM) and obesity has been recently suggested but very scanty data on the prevalence of FM in obese populations are available.
Marco Arreghini, Gian Mauro Manzoni, Gianluca Castelnuovo, Cristina Santovito, Paolo Capodaglio   +4 more
doaj   +1 more source

Online Self-Indexed Grammar Compression

, 2015
Although several grammar-based self-indexes have been proposed thus far, their applicability is limited to offline settings where whole input texts are prepared, thus requiring to rebuild index structures for given additional inputs, which is often the ...
F Claude, F Claude, G Cormode, G Navarro, M Karpinski, S Maruyama, S Maruyama, T Gagie, T Gagie, W Rytter, Y Takabatake   +10 more
core   +1 more source

Effects of Bacterial and Fungal Inocula on Biomass, Ecophysiology, and Uptake of Metals of Alyssoides utriculata (L.) Medik.

Plants, 2023
The inoculation of plants with plant-growth-promoting microorganisms (PGPM) (i.e., bacterial and fungal strains) is an emerging approach that helps plants cope with abiotic and biotic stresses.
Silvia Priarone, Sara Romeo, Simone Di Piazza, Stefano Rosatto, Mirca Zotti, Mauro Mariotti, Enrica Roccotiello   +6 more
doaj   +1 more source

RLZAP: Relative Lempel-Ziv with Adaptive Pointers

, 2016
Relative Lempel-Ziv (RLZ) is a popular algorithm for compressing databases of genomes from individuals of the same species when fast random access is desired.
A Farruggia, C Boucher, C Hoobin, D Belazzougui, H Ferrada, J Ziv, J Ziv, M Léonard, P Ferragina, R Raman, S Deorowicz, S Deorowicz, S Kuruppu   +12 more
core   +1 more source

Rust-Bio - a fast and safe bioinformatics library

, 2015
We present Rust-Bio, the first general purpose bioinformatics library for the innovative Rust programming language. Rust-Bio leverages the unique combination of speed, memory safety and high-level syntax offered by Rust to provide a fast and safe set of ...
Köster, Johannes
core   +2 more sources

FM-Indexing Grammars Induced by Suffix Sorting for Long Patterns

2022 Data Compression Conference (DCC), 2022
The run-length compressed Burrows-Wheeler transform (RLBWT) used in conjunction with the backward search introduced in the FM index is the centerpiece of most compressed indexes working on highly-repetitive data sets like biological sequences. Compared to grammar indexes, the size of the RLBWT is often much bigger, but queries like counting the ...
Deng, Jin Jie, Hon, Wing-Kai, Köppl, Dominik, Sadakane, Kunihiko   +3 more
openaire   +2 more sources