Results 71 to 80 of about 4,504,185 (191)

n-step FM-Index for Faster Pattern Matching

Procedia Computer Science, 2013
AbstractFast pattern matching is a requirement for many problems, specially for bioinformatics sequence analysis like short read mapping applications. This work presents a variation of the FM-index method, denoted n-step FM-index, that is applied in exact match genome search.We propose an alternative two-dimensional FM-index structure that allows ...
Chacón, Alejandro, Moure, Juan Carlos, Espinosa, Antonio, Hernández, Porfidio   +3 more
openaire   +1 more source

Mitigation of hepatic and gastric impairments induced by flunixin meglumine through co-administration with alpha lipoic acid in male rats

BMC Veterinary Research
Long term use of Flunixin meglumine produces many gastric and hepatic hazards. The current study aimed to investigate using Alpha lipoic acid (ALA) for treating flunixin meglumine (FM)-induced liver and gastrointestinal problems in male rats.
Zeynab Kh. El-Maddawy, Abdel-wahed A. Mashalla, Sulaiman Mohammed Alnasser, Abd El-Salam F. El-Sawy, Walied Abdo, Maher A. Kamel, Meshal Alotaibi, Mohsen A. Khormi, Ali M. Aborasain, Hanan H. Abd-El-Hafeez, Amal A. Awad   +10 more
doaj   +1 more source

A Compact Index for Order-Preserving Pattern Matching

, 2017
Order-preserving pattern matching was introduced recently but it has already attracted much attention. Given a reference sequence and a pattern, we want to locate all substrings of the reference sequence whose elements have the same relative order as the
Decaroli, Gianni, Gagie, Travis, Manzini, Giovanni   +2 more
core   +1 more source

Analyzing large-scale DNA Sequences on Multi-core Architectures

, 2015
Rapid analysis of DNA sequences is important in preventing the evolution of different viruses and bacteria during an early phase, early diagnosis of genetic predispositions to certain diseases (cancer, cardiovascular diseases), and in DNA forensics ...
Memeti, Suejb, Pllana, Sabri
core   +1 more source

The advantage of factorial mating under selection is uncovered by deterministically predicted rates of inbreeding

Genetics Selection Evolution, 2005
Rates of inbreeding (ΔF) in selected populations were predicted using the framework of long-term genetic contributions and validated against stochastic simulations.
Sørensen Anders, Berg Peer, Woolliams John A   +2 more
doaj   +1 more source

Improved ESP-index: a practical self-index for highly repetitive texts

, 2014
While several self-indexes for highly repetitive texts exist, developing a practical self-index applicable to real world repetitive texts remains a challenge.
F. Claude, F. Claude, G. Navarro, J. Barbay, J.I. Munro, K. Goto, O. Delpratt, S. Maruyama, T. Gagie, T. Gagie, T. Yamamoto   +10 more
core   +1 more source

Improved long read correction for de novo assembly using an FM-index

bioRxiv, 2016
Long read sequencing is changing the landscape of genomic research, especially de novo assembly. Despite the high error rate inherent to long read technologies, increased read lengths dramatically improve the continuity and accuracy of genome assemblies.
J. Holt, Jeremy R. Wang, Corbin D. Jones, L. McMillan   +3 more
semanticscholar   +1 more source

Sequential-Access FM-Indexes

, 2012
Previous authors have shown how to build FM-indexes efficiently in external memory, but querying them efficiently remains an open problem. Searching na vely for a pattern $P$ requires ( (|P|)) random access. In this paper we show how, by storing a few small auxiliary tables, we can access data only in the order in which they appear on disk, which ...
openaire   +2 more sources

Differential Neuroplastic Changes in Fibromyalgia and Depression Indexed by Up-Regulation of Motor Cortex Inhibition and Disinhibition of the Descending Pain System: An Exploratory Study

Frontiers in Human Neuroscience, 2019
Background: Major depressive disorder (MDD) and fibromyalgia (FM) present overlapped symptoms. Although the connection between these two disorders has not been elucidated yet, the disruption of neuroplastic processes that mediate the equilibrium in the ...
Tiago Madeira Cardinal, Luciana Conceição Antunes, Aline Patricia Brietzke, Cristiane Schulz Parizotti, Fabiana Carvalho, Andressa De Souza, Iraci Lucena da Silva Torres, Iraci Lucena da Silva Torres, Felipe Fregni, Wolnei Caumo, Wolnei Caumo, Wolnei Caumo   +11 more
doaj   +1 more source

Physical Characterization and Optimization of Fineness Moduli of Natural Sand from The North Region of Cameroon Used in Construction

Journal of Sustainable Construction Materials and Technologies, 2020
This paper deals with the physical characterization and the optimization of fineness moduli of some natural sand samples for their appropriate valorization in construction in North Cameroon.
Bertin Kagonbé
doaj   +1 more source