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FGMP: assessing fungal genome completeness [PDF]
BMC Bioinformatics, 2019 Background Inexpensive high-throughput DNA sequencing has democratized access to genetic information for most organisms so that research utilizing a genome or transcriptome of an organism is not limited to model systems.
Ousmane H. Cissé, Jason E. Stajich
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The diversity of fungal genome. [PDF]
Biol Proced Online, 2015 The genome size of an organism varies from species to species. The C-value paradox enigma is a very complex puzzle with regards to vast diversity in genome sizes in eukaryotes. Here we reported the detailed genomic information of 172 fungal species among
Mohanta TK, Bae H.
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The Dynamic Fungal Genome: Polyploidy, Aneuploidy and Copy Number Variation in Response to Stress. [PDF]
Annu Rev Microbiol, 2023 Fungal species have dynamic genomes and often exhibit genomic plasticity in response to stress. This genome plasticity often comes with phenotypic consequences that affect fitness and resistance to stress.
Vande Zande P, Zhou X, Selmecki A.
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Plant and Fungal Genome Editing to Enhance Plant Disease Resistance Using the CRISPR/Cas9 System. [PDF]
Front Plant Sci, 2021 Crop production has been substantially reduced by devastating fungal and oomycete pathogens, and these pathogens continue to threaten global food security.
Paul NC +7 more
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High molecular weight DNA extraction methods lead to high quality filamentous ascomycete fungal genome assemblies using Oxford Nanopore sequencing. [PDF]
Microb Genom, 2022 During the last two decades, whole-genome sequencing has revolutionized genetic research in all kingdoms, including fungi. More than 1000 fungal genomes have been submitted to sequence databases, mostly obtained through second generation short-read DNA ...
Petersen C +6 more
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Advances in understanding the evolution of fungal genome architecture. [PDF]
F1000Res, 2020 Diversity within the fungal kingdom is evident from the wide range of morphologies fungi display as well as the various ecological roles and industrial purposes they serve.
Priest SJ, Yadav V, Heitman J.
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CRISPR-Cas for Fungal Genome Editing: A New Tool for the Management of Plant Diseases. [PDF]
Front Plant Sci, 2019 Fungal pathogens are the main factors responsible for the most severe diseases affecting plants, leading to significant reduction in yield and crop quality and causing enormous economic losses worldwide.
Muñoz IV +4 more
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A plant pathology perspective of fungal genome sequencing. [PDF]
IMA Fungus, 2017 The majority of plant pathogens are fungi and many of these adversely affect food security. This mini-review aims to provide an analysis of the plant pathogenic fungi for which genome sequences are publically available, to assess their general genome ...
Aylward J +5 more
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G3: Genes, Genomes, Genetics, 2021 Transposable elements (TEs) impact genome plasticity, architecture, and evolution in fungal plant pathogens. The wide range of TE content observed in fungal genomes reflects diverse efficacy of host-genome defense mechanisms that can counter-balance TE ...
Cécile Lorrain +4 more
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Fungal genome resources at NCBI
Mycology, 2011 The National Center for Biotechnology Information (NCBI) is well known for the nucleotide sequence archive, GenBank and sequence analysis tool BLAST. However, NCBI integrates many types of biomolecular data from variety of sources and makes it available to the scientific community as interactive web resources as well as organized releases of bulk data.
Barbara Robbertse, Tatiana Tatusova
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