Results 241 to 250 of about 1,374,086 (326)

Analyzing the Challenges and Opportunities Associated With Harnessing New Antibiotics From the Fungal Microbiome. [PDF]

Microbiologyopen
Hossain MS, Amin MA, Islam S, Imam H, Das LC, Mahmud S.   +5 more
europepmc   +1 more source

Observation Bias in Metabarcoding

Molecular Ecology Resources, EarlyView.
ABSTRACT DNA metabarcoding is subject to observation bias associated with PCR and sequencing, which can result in observed read proportions differing from actual species proportions in the DNA extract. Here, we amplify and sequence a mock community of known composition containing marine fishes and cetaceans using four different primer sets and a ...
Megan R. Shaffer, Elizabeth Andruszkiewicz Allan, Amy M. Van Cise, Kim M. Parsons, Andrew Olaf Shelton, Ryan P. Kelly   +5 more
wiley   +1 more source

Genomic analysis of Inonotus hispidus provides insights into its medicinal properties and evolutionary dynamics. [PDF]

Sci Rep
Ding D, Wang H, Liang J, Su C, Zhang M, Jiao F, Bao L, Wang X.   +7 more
europepmc   +1 more source

Ancient Microbiomes as Mirrored by DNA Extracted From Century‐Old Herbarium Plants and Associated Soil

Molecular Ecology Resources, EarlyView.
ABSTRACT Numerous specimens stored in natural history collections have been involuntarily preserved together with their associated microbiomes. We propose exploiting century‐old soils occasionally found on the roots of herbarium plants to assess the diversity of ancient soil microbial communities originally associated with these plants.
Gianluca Grasso, Régis Debruyne, Martino Adamo, Olivier Rué, Franck Lejzerowicz, Lucie Bittner, Valeria Bianciotto, Roland Marmeisse   +7 more
wiley   +1 more source

Editorial: Highlights of the 16th European Conference on Fungal Genetics (Innsbruck, 5-8th March 2023). [PDF]

Front Fungal Biol
Gabaldón T, Goldman GH.
europepmc   +1 more source

The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae

, 2011
Cyprien Guérin, Ludovic Mallet, Jonathan Kreplak, Joëlle Amselem, Elisabeth Fournier, Arnaud Couloux, Corinne Cruaud, Hélène Chiapello   +7 more
openalex   +1 more source

Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin

, 2016
Allison K. Walker, Samantha L. Frasz, Keith A. Seifert, J. David Miller, Stephen J. Mondo, Kurt LaButti, Anna Lipzen, Rhyan B. Dockter, Megan Kennedy, Igor V. Grigoriev, Joseph W. Spatafora   +10 more
openalex   +1 more source

A Practical Comparison of Short‐ and Long‐Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples

Molecular Ecology Resources, EarlyView.
ABSTRACT Short‐read metabarcoding analysis is the gold standard for accessing partial 16S and ITS genes with high read quality. With the advent of long‐read sequencing, the amplification of full‐length target genes is possible, but with low read accuracy.
Coralie Rousseau, Nicolas Henry, Sylvie Rousvoal, Gwenn Tanguy, Erwan Legeay, Catherine Leblanc, Simon M. Dittami   +6 more
wiley   +1 more source

Nanopore sequencing and hybrid assembly: unraveling the genomic landscape of dollar spot with enhanced annotation and drug resistance profiling. [PDF]

Front Fungal Biol
Shi X, Zhao S, Gibbons JG, Jung G.
europepmc   +1 more source

Needle in a Haystack: A Droplet Digital Polymerase Chain Reaction Assay to Detect Rare Helminth Parasites Infecting Natural Host Populations

Molecular Ecology Resources, EarlyView.
ABSTRACT Helminths infect humans, livestock, and wildlife, yet remain understudied despite their significant impact on public health and agriculture. Because many of the most prevalent helminth‐borne diseases are zoonotic, understanding helminth transmission among wildlife could improve predictions and management of infection risks across species.
Chloe A. Fouilloux, Eric Neeno‐Eckwall, Ipsita Srinivas, Jonathan S. Compton, Josh Sampson, Jesse Weber, Cole Wolf, Amanda Hund, John Berini III, Heather Alexander, Emma Choi, Daniel I. Bolnick, Jessica L. Hite   +12 more
wiley   +1 more source