Results 21 to 30 of about 1,539,097 (354)

A plant pathology perspective of fungal genome sequencing. [PDF]

IMA Fungus, 2017
The majority of plant pathogens are fungi and many of these adversely affect food security. This mini-review aims to provide an analysis of the plant pathogenic fungi for which genome sequences are publically available, to assess their general genome ...
Aylward J, Steenkamp ET, Dreyer LL, Roets F, Wingfield BD, Wingfield MJ.   +5 more
europepmc   +2 more sources

Flow cytometry reveals that the rust fungus, U romyces bidentis ( P ucciniales), possesses the largest fungal genome reported—2489  M bp [PDF]

Molecular plant pathology, 2015
Ana Paula Ramos, S. C. C. de H. Tavares, Daniela Tavares, Maria do Céu Silva, João Loureiro, Pedro Talhinhas   +5 more
openalex   +2 more sources

A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina

Studies in Mycology, 2023
The subphylum Saccharomycotina is a lineage in the fungal phylum Ascomycota that exhibits levels of genomic diversity similar to those of plants and animals. The Saccharomycotina consist of more than 1 200 known species currently divided into 16 families,
M. Groenewald, C. T. Hittinger, K. Bensch, D. Opulente, Xing‐Xing Shen, Y. Li, C. Liu, A. Labella, X. Zhou, S. Limtong, S. Jindamorakot, P. Gonçalves, V. Robert, K. H. Wolfe, C. Rosa, T. Boekhout, N. Čadež, G. Péter, J. Sampaio, M. Lachance, Andrey M. Yurkov, Heide-Marie Daniel, M. Takashima, K. Boundy-Mills, D. Libkind, K. Aoki, T. Sugita, A. Rokas   +27 more
semanticscholar   +1 more source

Fungal genome sequencing: basic biology to biotechnology

Critical Reviews in Biotechnology, 2015
The genome sequences provide a first glimpse into the genomic basis of the biological diversity of filamentous fungi and yeast. The genome sequence of the budding yeast, Saccharomyces cerevisiae, with a small genome size, unicellular growth, and rich ...
Krishna Kant Sharma
openalex   +3 more sources

UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi

bioRxiv, 2022
In phylogenomics the evolutionary relationship of organisms is studied by their genomic information. A common approach to phylogenomics is to extract related genes from each organism, build a multiple sequence alignment and then reconstruct evolution ...
Dongwook Kim, C. Gilchrist, J. Chun, Martin Steinegger   +3 more
semanticscholar   +1 more source

Multiplex Base-Editing Enables Combinatorial Epigenetic Regulation for Genome Mining of Fungal Natural Products.

Journal of the American Chemical Society, 2022
Genome mining of cryptic natural products (NPs) remains challenging, especially in filamentous fungi, owing to their complex genetic regulation. Increasing evidence indicates that several epigenetic modifications often act cooperatively to control fungal
Fanglong Zhao, Chunxiao Sun, Zhiwen Liu, Alan Cabrera, Mario Escobar, Shunyu Huang, Qichen Yuan, Qiuyue Nie, Kevin Lee Luo, Angela S. P. Lin, Jeffrey A Vanegas, T. Zhu, Isaac B. Hilton, Xue Gao   +13 more
semanticscholar   +1 more source

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network

BMC Genomics, 2019
Background Enzymatic plant biomass degradation by fungi is a highly complex process and one of the leading challenges in developing a biobased economy. Some industrial fungi (e.g.
Claire Khosravi, Joanna E. Kowalczyk, Tania Chroumpi, Evy Battaglia, Maria-Victoria Aguilar Pontes, Mao Peng, Ad Wiebenga, Vivian Ng, Anna Lipzen, Guifen He, Diane Bauer, Igor V. Grigoriev, Ronald P. de Vries   +12 more
doaj   +1 more source

Genome-Wide Study of Conidiation-Related Genes in the Aphid-Obligate Fungal Pathogen Conidiobolus obscurus (Entomophthoromycotina)

Journal of Fungi, 2022
Fungi in the Entomophthorales order can cause insect disease and epizootics in nature, contributing to biological pest control in agriculture and forestry.
Lvhao Zhang, Tian Yang, Wangyin Yu, Xiaojun Wang, Xiang Zhou, Xudong Zhou   +5 more
doaj   +1 more source

Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass

Biotechnology for Biofuels, 2019
Background Trichoderma reesei is one of the major producers of enzymes for the conversion of plant biomass to sustainable fuels and chemicals. Crude plant biomass can induce the production of CAZymes in T.
Tiziano Benocci, Maria Victoria Aguilar-Pontes, Roland Sándor Kun, Ronnie J. M. Lubbers, Kathleen Lail, Mei Wang, Anna Lipzen, Vivian Ng, Igor V. Grigoriev, Bernhard Seiboth, Paul Daly, Ronald P. de Vries   +11 more
doaj   +1 more source

GalR, GalX and AraR co‐regulate d‐galactose and l‐arabinose utilization in Aspergillus nidulans

Microbial Biotechnology, 2022
Summary Filamentous fungi produce a wide variety of enzymes in order to efficiently degrade plant cell wall polysaccharides. The production of these enzymes is controlled by transcriptional regulators, which also control the catabolic pathways that ...
Jiali Meng, Zoltán Németh, Mao Peng, Erzsébet Fekete, Sandra Garrigues, Anna Lipzen, Vivian Ng, Emily Savage, Yu Zhang, Igor V. Grigoriev, Miia R. Mäkelä, Levente Karaffa, Ronald P. deVries   +12 more
doaj   +1 more source