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Analysis of histone modification interplay reveals two distinct domains in facultative heterochromatin in Pyricularia oryzae. [PDF]
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Methods in molecular biology, 2018
The term "genome annotation" includes identification of protein-coding and noncoding sequences (e.g., repeats, rDNA, and ncRNA) in genome assemblies and attaching functional information (metadata) to these annotated features. Here, we describe the basic outline of fungal nuclear and mitochondrial genome annotation as performed at the US Department of ...
S. Haridas, A. Salamov, I. Grigoriev
semanticscholar +4 more sources
The term "genome annotation" includes identification of protein-coding and noncoding sequences (e.g., repeats, rDNA, and ncRNA) in genome assemblies and attaching functional information (metadata) to these annotated features. Here, we describe the basic outline of fungal nuclear and mitochondrial genome annotation as performed at the US Department of ...
S. Haridas, A. Salamov, I. Grigoriev
semanticscholar +4 more sources
Fungal Biology Reviews, 2014
Fungal genomes vary considerably in size and organization. The genome of Microsporidium contains less than 3 Mb while the genomes of several Basidiomycetes and Ascomycetes greatly exceed 100 Mb. Likewise chromosome numbers and ploidy levels can differ even between closely related species.
E. Stukenbrock, D. Croll
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Fungal genomes vary considerably in size and organization. The genome of Microsporidium contains less than 3 Mb while the genomes of several Basidiomycetes and Ascomycetes greatly exceed 100 Mb. Likewise chromosome numbers and ploidy levels can differ even between closely related species.
E. Stukenbrock, D. Croll
semanticscholar +3 more sources
Fungal genomics and pathogenicity
Current Opinion in Plant Biology, 2001The filamentous fungal genetics community has enthusiastically embraced the utilization of genomics technologies to resolve long-standing issues in fungal biology. For example, such technologies have been proposed to study the mechanics of tip growth, photoreception, gene silencing, the molecular basis of conidiation, the pathway leading to sexual ...
B. Gillian Turgeon, O. C. Yoder
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2018
The availability of complete fungal genomes is expanding rapidly and is offering an extensive and accurate view of this "kingdom." The scientific milestone of free access to more than 1000 fungal genomes of different species was reached, and new and stimulating projects have meanwhile been released.
Benedita Sampaio-Maia +2 more
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The availability of complete fungal genomes is expanding rapidly and is offering an extensive and accurate view of this "kingdom." The scientific milestone of free access to more than 1000 fungal genomes of different species was reached, and new and stimulating projects have meanwhile been released.
Benedita Sampaio-Maia +2 more
openaire +3 more sources
Introduction: Overview of Fungal Genomics
2018Genome sequences and postgenomic tools have had a major impact on fungal research. When the first fungal genome sequences became available it became clear how much more complex fungal biology was than had been previously assumed. Since then an increasing number of genomes have become available enabling detailed comparative studies, especially when ...
Ronald P. de Vries +2 more
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The ebb and flow of a fungal genome
Trends in Microbiology, 1993Transposable DNA elements have only recently been described in a few species of filamentous fungi, but may be more abundant than previously believed. Several different elements have been isolated from the rice blast pathogen Magnaporthe grisea. The distribution and amplification of these elements suggest a potential role in the evolution of the fungal ...
John E. Hamer, Katherine F. Dobinson
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The Dawn of Fungal Pathogen Genomics
Annual Review of Phytopathology, 2006Abstract  Recent advances in sequencing technologies have led to a remarkable increase in the number of sequenced fungal genomes. Several important plant pathogenic fungi are among those that have been sequenced or are being sequenced. Additional fungal pathogens are likely to be sequenced in the near future.
Jin-Rong Xu +3 more
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