Prokaryotic taxonomy and functional diversity assessment of different sequencing platform in a hyper-arid Gobi soil in Xinjiang Turpan Basin, China [PDF]
Frontiers in Microbiology, 2023 Turpan Basin located in the eastern Xinjiang is a typical arid inland basin with extremely scarce water resources and a fragile ecosystem. Prokaryotic communities with unique genetic and physiological modifications can survive and function in such harsh ...
Zhidong Zhang +6 more
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Comparative transcriptomic analysis of Illumina and MGI next-generation sequencing platforms using RUNX3- and ZBTB46-instructed embryonic stem cells [PDF]
Frontiers in Genetics, 2023 Introduction: We have previously observed phenotypic and developmental changes upon the ectopic expression of the RUNX3 or the ZBTB46 transcription factors in mouse embryonic stem cell (ESC) derived progenitors.
Szilárd Póliska +8 more
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The oral microbiome profile of Pakistani infants characterized by 16S rRNA amplicon sequencingNCBI SRA [PDF]
Data in BriefThe oral microbiome is the second most complex and diverse ecosystem in the human body. A number of longitudinal studies assessing oral microbiome development in diverse populations has been reported recently.
Muhammad Shahzad +8 more
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Analysis of Software Read Cross-Contamination in DNBSEQ Data [PDF]
BiologyDNA nanoball sequencing (DNBSEQ) is one of the most rapidly developing sequencing technologies and is widely applied in genomic and transcriptomic investigations.
Dmitry N. Konanov +6 more
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Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI [PDF]
Data in BriefTrichoderma yunnanense strain TM10 was isolated from rhizosphere soil of rice plants cultivated under system of rice intensification (SRI) practises in West Java, Indonesia.
Dedat Prismantoro +8 more
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NucBalancer: streamlining barcode sequence selection for optimal sample pooling for sequencing [PDF]
GigaByteRecent advancements in next-generation sequencing (NGS) technologies have brought to the forefront the necessity for versatile, cost-effective tools capable of adapting to a rapidly evolving landscape. The emergence of numerous new sequencing platforms,
Saurabh Gupta , Ankur Sharma
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Effect of sequencing platforms on the sensitivity of chemical mutation detection using Hawk-Seq™ [PDF]
Genes and EnvironmentBackground Error-corrected next-generation sequencing (ecNGS) technologies have enabled the direct evaluation of genome-wide mutations after exposure to mutagens.
Sayaka Hosoi +8 more
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The complete mitochondrial genome data of Pholas orientalis (Gmelin, 1791) from Malaysia [PDF]
Data in BriefPholas orientalis (angelwing clam) is a mollusc species found in the coastal areas of Southeast Asia. Despite its economic significance, genetic information on the species is lacking. In this study, a P.
Hao Xuan Ho +3 more
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Characterizing the gut microbiome of birds-of-paradise in the northwest lowland of Papua Island [PDF]
Open Veterinary JournalBackground: Birds-of-paradise, renowned for their stunning plumage and intricate mating rituals, have been extensively studied for their external characteristics.
Safika Safika +3 more
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GigaByte, 2021 Metabarcoding is a widely used method for fast characterization of microbial communities in complex environmental samples. However, the selction of sequencing platform can have a noticeable effect on the estimated community composition. Here,
Xiaohuan Sun +12 more
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