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F-statistics algorithm for gene clustering evaluation
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Evaluation of Gene-Finding Algorithms by a Content- Balancing Accuracy Index
Journal of Biomolecular Structure and Dynamics, 2002A content-balancing accuracy index, called q(9), to evaluate gene-finding algorithms has been proposed. Here the concept of content-balancing means that the evaluation by this index is independent of the coding and non-coding composition of the sequence being evaluated.
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2008 IEEE International Conference on Acoustics, Speech and Signal Processing, 2008In this paper, we propose a new framework for assessing the biological significance of the outputs of any biclustering algorithm. The framework relies on the p-value computed by a Fisher's exact test on a 2x2 contingency table derived from gene ontology (GO) enrichment level and chromatin immunoprecipitation (ChIP) data enrichment level.
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