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Isometric gene tree reconciliation revisited [PDF]
Algorithms for Molecular Biology, 2017 Background Isometric gene tree reconciliation is a gene tree/species tree reconciliation problem where both the gene tree and the species tree include branch lengths, and these branch lengths must be respected by the reconciliation.
Broňa Brejová +4 more
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On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation [PDF]
BMC Bioinformatics, 2018 Background Duplication-Transfer-Loss (DTL) reconciliation is a powerful and increasingly popular technique for studying the evolution of microbial gene families.
Soumya Kundu, Mukul S. Bansal
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Horticulturae, 2023 Post-harvest handling and ripening techniques have an impact on peach quality and shelf life, which has a big impact on consumer satisfaction and market competitiveness.
Umar Hayat +5 more
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Mining Genes Related to Single Fruit Weight of Peach (Prunus persica) Based on WGCNA and GSEA
Horticulturae, 2023 Single fruit weight is an important goal of crop production and horticultural species domestication, but its genetic mechanism is still unclear. In this study, the fruits of different peach fruit types in their first rapid development period were used as
Hangling Bie +8 more
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Predicting the Evolution of Syntenies—An Algorithmic Review
Algorithms, 2021 Syntenies are genomic segments of consecutive genes identified by a certain conservation in gene content and order. The notion of conservation may vary from one definition to another, the more constrained requiring identical gene contents and gene orders,
Nadia El-Mabrouk
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Journal of Asia-Pacific Biodiversity, 2023 Genes are often selected for molecular taxonomy citing their agreement to taxonomically derived species trees. These results are then used to define and edit existing taxonomic hierarchies of species.
Himanshu Priyadarshi +2 more
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Genetic variation among sea turtle life stages and species suggests connectivity among ocean basins
Ecology and Evolution, 2022 Regional genetic differentiation of mitochondrial lineages occurs in migratory species with natal philopatry such as sea turtles. However, early juvenile dispersal represents a key opportunity for gene flow and colonization of new regions through founder
Katrina F. Phillips +4 more
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A Linear-Time Algorithm for the Isometric Reconciliation of Unrooted Trees
Algorithms, 2020 In the reconciliation problem, we are given two phylogenetic trees. A species tree represents the evolutionary history of a group of species, and a gene tree represents the history of a family of related genes within these species.
Broňa Brejová, Rastislav Královič
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Frontiers in Plant Science, 2021 Sour or wild jujube fruits and dried seeds are popular food all over the world. In this study, we reported a high-quality genome assembly of sour jujube (Ziziphus jujuba Mill. var.
Lian-Ying Shen +18 more
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Mitochondrial DNA. Part B. Resources, 2021 The genus Rhododendron of the heather family (Ericaceae) is well known and widely cultivated for their highly ornamental value. The most widely cultivated Rhododendron species is Rhododendron simsii (Indoor azalea).
Jie Xu +4 more
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