Results 21 to 30 of about 801,477 (317)

RNA‐Seq for Bacterial Gene Expression [PDF]

Current Protocols in Nucleic Acid Chemistry, 2018
AbstractRNA sequencing (RNA‐seq) has become the preferred method for global quantification of bacterial gene expression. With the continued improvements in sequencing technology and data analysis tools, the most labor‐intensive and expensive part of an RNA‐seq experiment is the preparation of sequencing libraries, which is also essential for the ...
Poulsen, Line Dahl, Vinther, Jeppe
openaire   +3 more sources

The supragenic organization of glycoside hydrolase encoding genes reveals distinct strategies for carbohydrate utilization in bacteria

Frontiers in Microbiology, 2023
Glycoside hydrolases (GHs) are carbohydrate-active enzymes essential for many environmental (e.g., carbon cycling) and biotechnological (e.g., biofuels) processes.
Renaud Berlemont
doaj   +1 more source

Development and application of the active surveillance of pathogens microarray to monitor bacterial gene flux. [PDF]

, 2008
BACKGROUND: Human and animal health is constantly under threat by emerging pathogens that have recently acquired genetic determinants that enhance their survival, transmissibility and virulence.
Oyston, Petra C. F., Titball, Richard W., Hinds, Jason, Richard W Titball, Wren, Brendan W, Dawson, LF, Titball Richard W, Dawson Lisa F, Lisa F Dawson, Richard A Stabler, Wren, Brendan W., Oyston, Petra CF, Titball, RW, Stabler, Richard A, Dawson, Lisa F, Dawson, Lisa F., Hinds Jason, Oyston, PCF, Stabler, Richard A., Stabler Richard A, Wren, BW, Witney, AA, Petra CF Oyston, Titball, Richard W, Oyston Petra CF, Witney, Adam A, Jim Wade, Witney Adam A, Witney, Adam A., Hinds, J, Wren Brendan W, Wade, Jim, Jason Hinds, Wade, J, Stabler, RA, Oyston, PC, Adam A Witney, Wade Jim, Brendan W Wren   +38 more
core   +1 more source

Genes within Genes in Bacterial Genomes

Microbiology Spectrum, 2018
ABSTRACT Genetic coding in bacteria largely operates via the “one gene-one protein” paradigm. However, the peculiarities of the mRNA structure, the versatility of the genetic code, and the dynamic nature of translation sometimes allow organisms to deviate from the standard rules of protein encoding.
Sezen, Meydan, Nora, Vázquez-Laslop, Alexander S, Mankin   +2 more
openaire   +2 more sources

Canine uterine bacterial infection induces upregulation of proteolysis-related genes and downregulation of homeobox and zinc finger factors. [PDF]

PLoS ONE, 2009
BACKGROUND: Bacterial infection with the severe complication of sepsis is a frequent and serious condition, being a major cause of death worldwide. To cope with the plethora of occurring bacterial infections there is therefore an urgent need to identify ...
Ragnvi Hagman, Elin Rönnberg, Gunnar Pejler   +2 more
doaj   +1 more source

Gene Location and Bacterial Sequence Divergence [PDF]

Molecular Biology and Evolution, 2002
Previous comparison of a relatively small set of homologous genes from Escherichia coli and Salmonella typhimurium revealed that genes nearer to the origin of replication had substitution rates lower than genes closer to the replication terminus. The recently completed sequences of numerous bacterial genomes have allowed us to test whether this effect ...
Mira A., Ochman H.
openaire   +4 more sources

VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution

Microbiome, 2023
Background Phylogenomic analysis has become an inseparable part of studies of bacterial diversity and evolution, and many different bacterial core genes have been collated and used for phylogenomic tree reconstruction.
Renmao Tian, Behzad Imanian
doaj   +1 more source

Sugar Lego: gene composition of bacterial carbohydrate metabolism genomic loci

Biology Direct, 2017
Background Bacterial carbohydrate metabolism is extremely diverse, since carbohydrates serve as a major energy source and are involved in a variety of cellular processes.
Anna Kaznadzey, Pavel Shelyakin, Mikhail S. Gelfand   +2 more
doaj   +1 more source

Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes [PDF]

Genome Biology and Evolution, 2019
Abstract Eukaryotes are typically depicted as descendants of archaea, but their genomes are evolutionary chimeras with genes stemming from archaea and bacteria. Which prokaryotic heritage predominates? Here, we have clustered 19,050,992 protein sequences from 5,443 bacteria and 212 archaea with 3,420,731 protein sequences from 150 ...
Brückner, Julia, Martin, William F.
openaire   +2 more sources

MLST revisited: the gene-by-gene approach to bacterial genomics [PDF]

Nature Reviews Microbiology, 2013
Multilocus sequence typing (MLST) was proposed in 1998 as a portable sequence-based method for identifying clonal relationships among bacteria. Today, in the whole-genome era of microbiology, the need for systematic, standardized descriptions of bacterial genotypic variation remains a priority.
Maiden, M, Jansen van Rensburg, M, Bray, J, Earle, S, Ford, SA, Jolley, K, McCarthy, N   +6 more
openaire   +3 more sources