Results 171 to 180 of about 495,544 (318)

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster [PDF]

, 2004
Casey Bergman, Joe Carlson, S Celniker
openalex   +1 more source

Transcriptional regulation of neuropeptide receptors underlies context‐dependent adaptation in Drosophila melanogaster

FEBS Open Bio, EarlyView.
Under environmental changes, the expression level of neuropeptide (NP) and neuropeptide receptor (NPR) genes changes to confer context‐dependent adaptation to the model organism Drosophila melanogaster. Through finding more regulatory elements in the NPR genes in comparison with their ligands (NPs), we found that NPR‐biased transcriptional regulation ...
SeungHeui Ryu, Yanan Wei, Zekun Wu, Tianmu Zhang, DoHoon Lee, Hadi Najafi, Woo Jae Kim   +6 more
wiley   +1 more source

GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining [PDF]

, 2004
Marco Masseroli, D Martucci, Francesco Pinciroli   +2 more
openalex   +1 more source

A unified model for Duchenne muscular dystrophy gene involvement in cancer: context‐dependent tumour suppression and oncogenicity

FEBS Open Bio, EarlyView.
We propose a context‐dependent model where the Duchenne muscular dystrophy (DMD) gene acts as a tumour suppressor in aggressive tumours and as an oncogene in less aggressive ones. We propose this model as a unified framework to explain the opposing survival associations with DMD expression and to guide experimental exploration of the dual role of DMD ...
Lee Machado, Leanne Jones, Sonika Divakar, Michael Naidoo, Karen Anthony   +4 more
wiley   +1 more source

A conceptual framework for human-AI collaborative genome annotation. [PDF]

Brief Bioinform
Li X, Whan A, McNeil M, Starns D, Irons J, Andrew SC, Suchecki R.   +6 more
europepmc   +1 more source

Galba: genome annotation with miniprot and AUGUSTUS. [PDF]

BMC Bioinformatics, 2023
Brůna T, Li H, Guhlin J, Honsel D, Herbold S, Stanke M, Nenasheva N, Ebel M, Gabriel L, Hoff KJ.   +9 more
europepmc   +1 more source

Genome annotation by high-throughput 5′ RNA end determination [PDF]

, 2004
Byung Joon Hwang, Hans‐Michael Müller, Paul W. Sternberg   +2 more
openalex   +1 more source

The impact of Hnrnpl deficiency on transcriptional patterns of developing muscle cells

FEBS Open Bio, EarlyView.
We performed nanopore whole‐transcriptome sequencing comparing RNA from Hnrnpl‐knockdown versus control C2C12 myoblasts to investigate the contributions of Hnrnpl to muscle development. Our results indicate that Hnrnpl regulates the expression of genes involved with Notch signaling and skeletal muscle, particularly splicing patterns of specific muscle ...
Hannah R. Littel, Mekala Gunasekaran, Audrey L. Daugherty, Natalya M. Wells, Johnnie Turner, Christine C. Bruels, Christina A. Pacak, Isabelle Draper, Peter B. Kang   +8 more
wiley   +1 more source

Bakta Web - rapid and standardized genome annotation on scalable infrastructures. [PDF]

Nucleic Acids Res
Beyvers S, Jelonek L, Goesmann A, Schwengers O.   +3 more
europepmc   +1 more source

Improving genome annotations using phylogenetic profile anomaly detection [PDF]

, 2004
Tarjei S. Mikkelsen, James E. Galagan, Jill P. Mesirov   +2 more
openalex   +1 more source