Results 41 to 50 of about 5,337,258 (380)

On the sequencing of the human genome [PDF]

Proceedings of the National Academy of Sciences, 2002
Two recent papers using different approaches reported draft sequences of the human genome. The international Human Genome Project (HGP) used the hierarchical shotgun approach, whereas Celera Genomics adopted the whole-genome shotgun (WGS) approach. Here, we analyze whether the latter paper provides a meaningful test of the WGS approach on a mammalian ...
Waterston, Robert H., Lander, Eric S., Sulston, John E.   +2 more
openaire   +2 more sources

Complete genome sequence of Meiothermus silvanus type strain (VI-R2). [PDF]

, 2010
Meiothermus silvanus (Tenreiro et al. 1995) Nobre et al. 1996 belongs to a thermophilic genus whose members share relatively low degrees of 16S rRNA gene sequence similarity.
Bristow, James, Chang, Yun-Juan, Chen, Amy, Cheng, Jan-Fang, Copeland, Alex, Eisen, Jonathan A, Glavina Del Rio, Tijana, Goodwin, Lynne, Göker, Markus, Han, Cliff, Hauser, Loren, Hugenholtz, Philip, Ivanova, Natalia, Jeffries, Cynthia D, Klenk, Hans-Peter, Kyrpides, Nikos C, Land, Miriam, Lapidus, Alla, Liolios, Konstantinos, Lowry, Stephen, Lucas, Susan, Markowitz, Victor, Mavromatis, Konstantinos, Mikhailova, Natalia, Nolan, Matt, Palaniappan, Krishna, Pati, Amrita, Pitluck, Sam, Rohde, Manfred, Sikorski, Johannes, Tice, Hope, Tindall, Brian J, Woyke, Tanja   +32 more
core   +1 more source

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

Nature, 2007
The analysis of the first plant genomes provided unexpected evidence for genome duplication events in species that had previously been considered as true diploids on the basis of their genetics.
O. Jaillon, J. Aury, B. Noel, A. Policriti, C. Clépet, A. Casagrande, N. Choisne, S. Aubourg, N. Vitulo, Claire Jubin, A. Vezzi, F. Legeai, P. Hugueney, C. Dasilva, D. Horner, E. Mica, D. Jublot, J. Poulain, Clémence Bruyère, A. Billault, Béatrice Segurens, M. Gouyvenoux, Edgardo Ugarte, F. Cattonaro, Véronique Anthouard, V. Vico, Cristian Del Fabbro, M. Alaux, G. Di Gaspero, V. Dumas, Nicoletta Felice, S. Paillard, Irena Juman, M. Moroldo, S. Scalabrin, Aurélie Canaguier, I. Le Clainche, G. Malacrida, E. Durand, G. Pesole, V. Laucou, P. Chatelet, D. Merdinoglu, M. Delledonne, M. Pezzotti, A. Lecharny, Claude Scarpelli, F. Artiguenave, M. Pè, G. Valle, M. Morgante, M. Caboche, A. Adam-Blondon, J. Weissenbach, F. Quétier, P. Wincker   +55 more
semanticscholar   +1 more source

REAPR: a universal tool for genome assembly evaluation. [PDF]

, 2013
Methods to reliably assess the accuracy of genome sequence data are lacking. Currently completeness is only described qualitatively and mis-assemblies are overlooked.
Berriman, Matthew, Hunt, Martin, Kikuchi, Taisei, Newbold, Chris, Otto, Thomas D, Sanders, Mandy   +5 more
core   +2 more sources

The complete genome sequence of the Gram-positive bacterium Bacillus subtilis

Nature, 1997
Bacillus subtilis is the best-characterized member of the Gram-positive bacteria. Its genome of 4,214,810 base pairs comprises 4,100 protein-coding genes.
F. Kunst, N. Ogasawara, I. Moszer, A. Albertini, G. Alloni, V. Azevedo, M. Bertero, M. Bertero, P. Bessières, A. Bolotin, S. Borchert, R. Borriss, L. Boursier, A. Brans, M. Braun, S. Brignell, S. Bron, S. Brouillet, S. Brouillet, C. Bruschi, B. Caldwell, V. Capuano, N. Carter, S-K. Choi, Jean-Jacques Codani, I. Connerton, N. Cummings, R. Daniel, F. Denizot, K. Devine, A. Düsterhöft, S. Ehrlich, P. T. Emmerson, K. Entian, J. Errington, C. Fabret, E. Ferrari, D. Foulger, C. Fritz, M. Fujita, Y. Fujita, S. Fuma, A. Galizzi, N. Galleron, S. Ghim, P. Glaser, A. Goffeau, E. Golightly, G. Grandi, G. Guiseppi, B. Guy, K. Haga, J. Haiech, C. Harwood, A. Hénaut, H. Hilbert, S. Holsappel, S. Hosono, M. Hullo, M. Itaya, Louis M. Jones, B. Joris, D. Karamata, Y. Kasahara, M. Klaerr-Blanchard, C. Klein, Y. Kobayashi, P. Koetter, G. Koningstein, Susanne Krogh, M. Kumano, K. Kurita, A. Lapidus, S. Lardinois, J. Lauber, V. Lazarevic, S. Lee, A. Lévine, H. Liu, S. Masuda, C. Mauël, C. Médigue, C. Médigue, N. Medina, R. P. Mellado, M. Mizuno, D. Moestl, S. Nakai, M. Noback, D. Noone, M. O'Reilly, K. Ogawa, A. Ogiwara, B. Oudega, S. Park, V. Parro, T. Pohl, D. Portetelle, S. Porwollik, A. M. Prescott, E. Presecan, P. Pujić, B. Purnelle, G. Rapoport, M. Rey, Stacey Reynolds, M. Rieger, C. Rivolta, E. Rocha, E. Rocha, B. Roche, M. Rose, Y. Sadaie, Toshitada Sato, E. Scanlan, S. Schleich, R. Schroeter, F. Scoffone, J. Sekiguchi, A. Sękowska, S. Séror, P. Serror, B. Shin, B. Soldo, A. Sorokin, E. Tacconi, T. Takagi, H. Takahashi, K. Takemaru, M. Takeuchi, A. Tamakoshi, T. Tanaka, P. Terpstra, A. Tognoni, V. Tosato, S. Uchiyama, M. Vandenbol, F. Vannier, A. Vassarotti, A. Viari, R. Wambutt, E. Wedler, H. Wedler, T. Weitzenegger, P. Winters, A. Wipat, Hiroki Yamamoto, K. Yamane, K. Yasumoto, Katsunori Yata, K. Yoshida, H. Yoshikawa, E. Zumstein, H. Yoshikawa, Antoine Danchin   +154 more
semanticscholar   +1 more source

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

bioRxiv, 2023
Background  PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb) and highly accurate (> Q20). Because of these properties, they have revolutionised genome assembly leading to more accurate and contiguous genomes.
Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, G. Formenti, Linelle Abueg, J. Torrance, Eugene W. Myers, R. Durbin, Mark Blaxter, Shane A. McCarthy   +9 more
semanticscholar   +1 more source

Draft Genome Sequence of the Serratia rubidaea CIP 103234T Reference Strain, a Human-Opportunistic Pathogen. [PDF]

, 2015
We provide here the first genome sequence of a Serratia rubidaea isolate, a human-opportunistic pathogen.
Bonnin, RA, Dortet, L, Girlich, D, Imanci, D, Naas, T   +4 more
core   +1 more source

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

Nature Genetics, 2019
Like many other crops, the cultivated peanut (Arachis hypogaea L.) is of hybrid origin and has a polyploid genome that contains essentially complete sets of chromosomes from two ancestral species.
D. Bertioli, J. Jenkins, J. Clevenger, O. Dudchenko, D. Gao, G. Seijo, S. Leal‐Bertioli, Longhui Ren, A. Farmer, M. Pandey, S. S. Samoluk, Brian Abernathy, Gaurav Agarwal, C. Ballén‐Taborda, Connor Cameron, Jacqueline Campbell, Carolina Chavarro, A. Chitikineni, Y. Chu, S. Dash, Moaine El Baidouri, Moaine El Baidouri, B. Guo, Wei Huang, K. Kim, K. Kim, W. Korani, Sophie Lanciano, Sophie Lanciano, Christopher Lui, Marie Mirouze, Marie Mirouze, M. Moretzsohn, Melanie Pham, J. Shin, J. Shin, K. Shirasawa, Senjuti Sinharoy, A. Sreedasyam, N. Weeks, Xinyou Zhang, Zheng Zheng, Ziqi Sun, L. Froenicke, Erez Lieberman Aiden, R. Michelmore, R. Varshney, C. Holbrook, Ethalinda K. S. Cannon, B. Scheffler, J. Grimwood, P. Ozias‐Akins, S. Cannon, S. Jackson, J. Schmutz   +54 more
semanticscholar   +1 more source

Chloroplast genome sequence of the hybrid variety ‘Gagsi’, one of the colored calla lilies (Zantedeschia spp.)

Mitochondrial DNA. Part B. Resources, 2020
The complete chloroplast genome of Zantedeschia spp. in the family Araceae was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of Zantedeschia spp.
Jong-Bo Kim, Hwan-Rae Yang, Sang-Hee Lee, Young-Jin Kim, Tae-Ho Park   +4 more
doaj   +1 more source

Draft Genome Sequence of Campylobacter jejuni 11168H [PDF]

, 2017
Campylobacter jejuni is the most prevalent cause of food-borne gastroenteritis in the developed world. The reference and original sequenced strain C. jejuni NCTC11168 has low levels of motility compared to clinical isolates.
Boetzer, Bolger, Champion, Elmi, Epps, Gundogdu, Jones, Karlyshev, Karlyshev, Karlyshev, Nadalin, Nyati, Seemann, Walker   +13 more
core   +4 more sources