Results 211 to 220 of about 319,994 (331)

Community-curated Galaxy interfaces with the Galaxy Labs Engine. [PDF]

Gigascience
Hyde CJ, Syme A, Batut B, Zierep PF, Mok W, Bacon WA, Price GR.   +6 more
europepmc   +1 more source

RAMS: Residual‐Based Adversarial‐Gradient Moving Sample Method for Scientific Machine Learning in Solving Partial Differential Equations

Advanced Intelligent Discovery, EarlyView.
We propose a residual‐based adversarial‐gradient moving sample (RAMS) method for scientific machine learning that treats samples as trainable variables and updates them to maximize the physics residual, thereby effectively concentrating samples in inadequately learned regions.
Weihang Ouyang, Min Zhu, Wei Xiong, Si‐Wei Liu, Lu Lu   +4 more
wiley   +1 more source

Splitpea: a Python package for protein-protein interaction network rewiring analysis due to alternative splicing. [PDF]

Bioinformatics
Zhong J, Cantu A, Dannenfelser R, Yao V.
europepmc   +1 more source

Why Physics Still Matters: Improving Machine Learning Prediction of Material Properties With Phonon‐Informed Datasets

Advanced Intelligent Discovery, EarlyView.
Phonons‐informed machine‐learning predictive models are propitious for reproducing thermal effects in computational materials science studies. Machine learning (ML) methods have become powerful tools for predicting material properties with near first‐principles accuracy and vastly reduced computational cost.
Pol Benítez, Cibrán López, Edgardo Saucedo, Teruyasu Mizoguchi, Claudio Cazorla   +4 more
wiley   +1 more source

Automating Test Case Identification in Open Source Projects on GitHub [PDF]

, 2021
Matej Madeja, Jaroslav Porubän, Michaela Bačíková, Matúš Sulír, Ján Juhár, Sergej Chodarev, Filip Gurbáľ   +6 more
openalex  

WeavePop: a bioinformatics workflow to explore and analyze genomic variants of eukaryotic populations. [PDF]

G3 (Bethesda)
Zirión-Martínez C, Magwene PM.
europepmc   +1 more source

The Interoperability Challenge in DFT Workflows Across Implementations

Advanced Intelligent Discovery, EarlyView.
Interoperability and cross‐validation remain major challenges in the computational materials science. In this work, we introduce a common input/output standard that enables internal translation across multiple workflow managers—AiiDA, PerQueue, Pipeline Pilot, and SimStack—while producing results in a unified schema.
Simon K. Steensen, Tushar Singh Thakur, Manuel Dillenz, Johan M. Carlsson, Celso R. C. Rêgo, Eibar Flores, Hamidreza Hajiyani, Felix Hanke, Juan María García Lastra, Wolfgang Wenzel, Nicola Marzari, Tejs Vegge, Giovanni Pizzi, Ivano E. Castelli   +13 more
wiley   +1 more source

DeepMapper: Attention‐Based AutoEncoder for System Identification in Wound Healing and Stage Prediction

Advanced Intelligent Discovery, EarlyView.
The authors develop a deep learning model for real‐time tracking of wound progression. The deep learning framework maps the nonlinear evolution of a time series of images to a latent space, where they learn a linear representation of the dynamics. The linear model is interpretable and suitable for applications in feedback control.
Fan Lu, Ksenia Zlobina, Michael Briden, Oscar Avalos, Héctor Carrión, Sebastian Osorio, Hsin‐ya Yang, Alexandra Nava, Michelle D. Bagood, Marco Rolandi, Roslyn Rivkah Isseroff, Marcella Gomez   +11 more
wiley   +1 more source

Developing Theory and Methods to Understand and Improve Collaboration in Open Source Software Development on GitHub

, 2018
Olivia B. Newton, Stephen M. Fiore, Jihye Song   +2 more
openalex   +2 more sources

Automated Bacterial Identification and Morphological Feature Analysis in Low‐Dose Cryo‐EM Using YOLOv11

Advanced Intelligent Discovery, EarlyView.
AI‐based tools enable rapid characterization of bacterial ultrastructure in low‐dose cryogenic transmission electron microscopy. The envelope thickness tool quantifies membrane thickness and anisotropy. The flagella module analyzes filament morphology and detects cell‐flagella contacts.
Sita Sirisha Madugula, Lynnicia N. Massenburg, Spenser R. Brown, Amber N. Bible, Chanda R. Harris, Lance X. Zhang, Kiara Parker, Scott T. Retterer, Jennifer L. Morrell‐Falvey, Rama K. Vasudevan, Alexis N. Williams   +10 more
wiley   +1 more source