Genome-wide mining, characterization, and development of microsatellite markers in gossypium species. [PDF]
Sci Rep, 2015 Although much research has been conducted to characterize microsatellites and develop markers, the distribution of microsatellites remains ambiguous and the use of microsatellite markers in genomic studies and marker-assisted selection is limited.
Wang Q +8 more
europepmc +5 more sources
PlantsExpanding genetic variability of cultivated cotton (Gossypium hirsutum) is essential for improving fiber quality and pest resistance. This study synthesized allotetraploids through interspecific hybridization between G. herbaceum (A1) and G. nelsonii (G3)
Fakhriddin N Kushanov +2 more
exaly +5 more sources
Genome-wide comparative and evolutionary analysis of Calmodulin-binding Transcription Activator (CAMTA) family in Gossypium species. [PDF]
Sci Rep, 2018 The CAMTA gene family is crucial in managing both biotic and abiotic stresses in plants. Our comprehensive analysis of this gene family in cotton resulted in the identification of 6, 7 and 9 CAMTAs in three sequenced cotton species, i.e., Gossypium ...
Pant P, Iqbal Z, Pandey BK, Sawant SV.
europepmc +2 more sources
Genome-Wide Survey and Comparative Analysis of Long Terminal Repeat (LTR) Retrotransposon Families in Four Gossypium Species. [PDF]
Sci Rep, 2018 Long terminal repeat (LTR) retrotransposon is the most abundant DNA component and is largely responsible for plant genome size variation. Although it has been studied in plant species, very limited data is available for cotton, the most important fiber ...
Liu Z +8 more
europepmc +2 more sources
Genome-Wide Identification and Expression Analysis of the Metacaspase Gene Family in Gossypium Species. [PDF]
Genes (Basel), 2019 Metacaspases (MCs) are cysteine proteases that are important for programmed cell death (PCD) in plants. In this study, we identified 89 MC genes in the genomes of four Gossypium species (Gossypium raimondii, Gossypium barbadense, Gossypium hirsutum, and ...
Fan S +19 more
europepmc +2 more sources
Genome-wide comparative analysis of NBS-encoding genes in four Gossypium species. [PDF]
BMC Genomics, 2017 Nucleotide binding site (NBS) genes encode a large family of disease resistance (R) proteins in plants. The availability of genomic data of the two diploid cotton species, Gossypium arboreum and Gossypium raimondii, and the two allotetraploid cotton ...
Xiang L +6 more
europepmc +2 more sources
Genome-wide identification, characterization and expression profiles of the CCD gene family in Gossypium species. [PDF]
3 Biotech, 2021 Zhang S +10 more
europepmc +2 more sources
Genome-wide identification of the TIFY gene family in three cultivated Gossypium species and the expression of JAZ genes. [PDF]
Sci Rep, 2017 TIFY proteins are plant-specific proteins containing TIFY, JAZ, PPD and ZML subfamilies. A total of 50, 54 and 28 members of the TIFY gene family in three cultivated cotton species—Gossypium hirsutum, Gossypium barbadense and Gossypium arboretum—were ...
Sun Q +7 more
europepmc +2 more sources
Conservation and divergence of abiotic stress-responsive gene co-expression networks in diploid and tetraploid cotton [PDF]
Frontiers in Plant ScienceCotton (Gossypium spp.) is highly susceptible to abiotic stresses, including temperature extremes, drought, and salinity. The diploid species Gossypium arboreum retains stress adaptive traits that are poorly represented in modern tetraploid cultivars ...
Heng Wang +6 more
doaj +2 more sources
Patterns of Genetic Diversity among Alphasatellites Infecting Gossypium Species. [PDF]
Pathogens, 2022 Alphasatellites are small single-stranded circular DNA molecules associated with geminiviruses and nanoviruses. In this study, a meta-analysis of known alphasatellites isolated from the genus Gossypium (cotton) over the last two decades was performed. The phylogenetic and pairwise sequence identity analysis suggested that cotton-infecting begomoviruses
Mubin M +9 more
europepmc +4 more sources