Results 41 to 50 of about 72,703 (264)

AnySeq/GPU

Proceedings of the 36th ACM International Conference on Supercomputing, 2022
In recent years, the rapidly increasing number of reads produced by next-generation sequencing (NGS) technologies has driven the demand for efficient implementations of sequence alignments in bioinformatics. However, current state-of-the-art approaches are not able to leverage the massively parallel processing capabilities of modern GPUs with close-to ...
André Müller, Bertil Schmidt, Richard Membarth, Roland Leißa, Sebastian Hack   +4 more
openaire   +2 more sources

Optimization and acceleration of distance histogram algorithm of three-dimensionspace data of coal mine

Gong-kuang zidonghua, 2017
The properties and data structure of distance histogram algorithm of three-dimensional space data were analyzed, and a general computing method based on graphics processor and a high performance computing method based on FPGA were proposed.
PEI Hao, YOU Xiaorong, NIU Xinwei
doaj   +1 more source

Molecular characterization of covRS mutations in M1UK Streptococcus pyogenes

FEBS Open Bio, EarlyView.
Group A Streptococcus (GAS) acquires covRS mutations driving a hypervirulent bacterial state, frequently associated with invasive disease‐like necrotizing fasciitis. We demonstrate that the newly emerged M1UK GAS lineage can also acquire these mutations.
Jarrad Pritchard, Emma‐Jayne Proctor, Jiawa Wang, Nikolas P. Johnston, Andrew Hayes, Georgia McCorkell, Haibo Yu, Jai Tree, Mark R. Davies, Mark J. Walker, Ronald Sluyter, Stephan Brouwer, Martina L. Sanderson‐Smith   +12 more
wiley   +1 more source

PPT-GPU: Scalable GPU Performance Modeling

IEEE Computer Architecture Letters, 2019
Performance modeling is a challenging problem due to the complexities of hardware architectures. In this paper, we present PPT-GPU, a scalable and accurate simulation framework that enables GPU code developers and architects to predict the performance of applications in a fast, and accurate manner on different GPU architectures.
Yehia Arafa, Abdel-Hameed A. Badawy, Gopinath Chennupati, Nandakishore Santhi, Stephan J. Eidenbenz   +4 more
openaire   +1 more source

MagmaFlow: A desktop platform for artificial intelligence‐driven expression analysis

FEBS Open Bio, EarlyView.
MagmaFlow is a free, no‐code platform for gene expression analysis. It generates interactive volcano plots, links genes to literature, pathways, and diseases, prioritizes candidates using millions of publications, identifies affected biological processes, builds network diagrams, and exports publication‐ready figures and reports for macOS and Windows ...
Carlos E. Buss, Ao Li, Eduardo H. Gilglioni, Mayank Bansal, Sumeet Pal Singh, Latifa Bakiri, Alessandra K. Cardozo, Esteban N. Gurzov   +7 more
wiley   +1 more source

Exploring GPU-to-GPU Communication: Insights into Supercomputer Interconnects

SC24: International Conference for High Performance Computing, Networking, Storage and Analysis
Multi-GPU nodes are increasingly common in the rapidly evolving landscape of exascale supercomputers. On these systems, GPUs on the same node are connected through dedicated networks, with bandwidths up to a few terabits per second. However, gauging performance expectations and maximizing system efficiency is challenging due to different technologies ...
Daniele De Sensi, Lorenzo Pichetti, Flavio Vella, Tiziano De Matteis, Zebin Ren, Luigi Fusco, Matteo Turisini, Daniele Cesarini, Kurt Lust, Animesh Trivedi, Duncan Roweth, Filippo Spiga, Salvatore Di Girolamo, Torsten Hoefler   +13 more
openaire   +6 more sources

A Simplified Laminar Flow Model for the Pultrusion of Glass Fiber/Polyethylene Terephthalate Commingled Yarns

Advanced Engineering Materials, EarlyView.
A simplified thermoplastic pultrusion model is developed to predict thermal fields in glass fiber/polyethylene terephthalate (GF/PET) composites with reduced computational cost. By combining effective material homogenization, validation against literature data, and Gaussian‐process‐based optimization, the study reveals how heating limits, pulling speed,
Elder Soares, Nadège Bouchonneau, Christian Jochum, Donald Radford   +3 more
wiley   +1 more source

Interactive Molecular Graphics for Augmented Reality Using HoloLens

Journal of Integrative Bioinformatics, 2018
Immersive technologies like stereo rendering, virtual reality, or augmented reality (AR) are often used in the field of molecular visualisation. Modern, comparably lightweight and affordable AR headsets like Microsoft’s HoloLens open up new possibilities
Müller Christoph, Krone Michael, Huber Markus, Biener Verena, Herr Dominik, Koch Steffen, Reina Guido, Weiskopf Daniel, Ertl Thomas   +8 more
doaj   +1 more source

Is an Apple an Orange? A Large Language Model Benchmark for Candidate Term Extraction and Subclass Decisions Against Upper Ontologies in Engineering and Materials Science

Advanced Engineering Materials, EarlyView.
Building machine‐readable vocabularies for materials science is slow, expert‐driven work. This study benchmarks 13 large language models on two of its first steps: finding candidate terms in engineering articles and deciding where they belong in a class hierarchy.
Thomas Bjarsch, Maximilian Holland, Klaus Drechsler, Johannes Schilp   +3 more
wiley   +1 more source

Development methodologies for GPU and cluster of GPUs [PDF]

, 2013
This book chapter proposes to draw several development methodologies to obtain efficient codes in classical scientific applications. Those methodologies are based on the feedback from several research works involving GPUs, either alone in a single machine or in a cluster of machines.
Contassot-Vivier, Sylvain, Vialle, Stéphane, Gustedt, Jens   +2 more
openaire   +3 more sources